A Modeling Framework for Multi-View Data, with Applications to the Pioneer 100 Study and Protein Interaction Networks

多视图数据建模框架，及其在 Pioneer 100 研究和蛋白质相互作用网络中的应用

• 批准号: 9752596
• 负责人: Jacob Bien
• 金额: $ 32.37万
• 依托单位: UNIVERSITY OF WASHINGTON
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-08-01 至 2021-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9752596
• 关键词: Address; Adoption; Agreement; Algorithms; Biology; Biomedical Research; Clinical Data; Communities; Complex; Computer software; Conflict (Psychology); Data; Data Set; Detection; Development; Dimensions; Disease; Foundations; Future; Gene Expression; Genetic; Genomics; Goals; Health; Human; Individual; Measurement; Measures; Medical Genetics; Meta-Analysis; Methodology; Methods; Modeling; Participant; Patients; Principal Component Analysis; Proteins; Proteomics; Records; Research Personnel; Resources; Set protein; Statistical Data Interpretation; Statistical Methods; Technology; Testing; Time; Trust; Validation; Variant; genomic data; improved; insight; metabolomics; novel strategies; open source; unsupervised learning

New advances in biomedical research have made it possible to collect multiple data “views” — for example, genetic, metabolomic, and clinical data — for a single patient. Such multi-view data promises to offer deeper insights into a patient's health and disease than would be possible if just one data view were available. However, in order to achieve this promise, new statistical methods are needed. This proposal involves developing statistical methods for the analysis of multi-view data. These methods can be used to answer the following fundamental question: do the data views contain redundant information about the observations, or does each data view contain a different set of information? The answer to this question will provide insight into the data views, as well as insight into the observations. If two data views contain redundant information about the observations, then those two data views are related to each other. Furthermore, if each data view tells the same “story” about the observations, then we can be quite confident that the story is true. The investigators will develop a unified framework for modeling multi-view data, which will then be applied in a number of settings. In Aim 1, this framework will be applied to multi-view multivariate data (e.g. a single set of patients, with both clinical and genetic measurements), in order to determine whether a single clustering can adequately describe the patients across all data views, or whether the patients cluster separately in each data view. In Aim 2, the framework will be applied to multi-view network data (e.g. a single set of proteins, with both binary and co-complex interactions measured), in order to determine whether the nodes belong to a single set of communities across the data views, or a separate set of communities in each data view. In Aim 3, the framework will be applied to multi-view multivariate data in order to determine whether the observations can be embedded in a single latent space across all data views, or whether they belong to a separate latent space in each data view. In Aims 1–3, the methods developed will be applied to the Pioneer 100 study, and to the protein interactome. In Aim 4(a), the availability of multiple data views will be used in order to develop a method for tuning parameter selection in unsupervised learning. In Aim 4(b), protein communities that were identified in Aim 2 will be validated experimentally. High-quality open source software will be developed in Aim 5. The methods developed in this proposal will be used to determine whether the findings from multiple data views are the same or different. The application of these methods to multi-view data sets, including the Pioneer 100 study and the protein interactome, will improve our understanding of human health and disease, as well as fundamental biology.

生物医学研究的新进展使得收集多种数据“视图”成为可能——例如，