Functional role of hsa-miR-504 in airway inflammation and remodeling in asthma

hsa-miR-504 在哮喘气道炎症和重塑中的功能作用

• 批准号: 9762966
• 负责人: Jose Luis Gomez-Villalobos
• 金额: $ 17.4万
• 依托单位: YALE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-07-01 至 2020-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9762966
• 关键词: Address; Airway Disease; Asthma; Base Sequence; Biological; Biological Assay; Biopsy; Blood Circulation; Bronchial Hyperreactivity; Cell Differentiation process; Cell Line; Cells; Chitinase; Chronic; Clinical; Cluster Analysis; Computer Analysis; Data Set; Development; Disease; Epithelial; Epithelial Cells; Evaluation; Family; Flow Cytometry; Gene Expression; Gene Expression Profile; Gene Targeting; Genes; Genetic Transcription; Goals; Health Care Costs; Healthcare; Immunophenotyping; Impairment; In Situ Hybridization; Individual; Inflammation; Inflammatory; Lead; Lung diseases; Measures; Messenger RNA; MicroRNAs; Modeling; Molecular; Monitor; Multicenter Trials; National Heart, Lung, and Blood Institute; Nucleotides; Outcome; Pathway interactions; Phenotype; Physiological; Population; Proteins; Protocols documentation; Pulmonary Function Test/Forced Expiratory Volume 1; Regulator Genes; Research; Respiratory physiology; Risk; Role; Severities; Source; Sputum; Subgroup; Susceptibility Gene; System; Tissues; Transcript; United States; adverse outcome; airway inflammation; airway obstruction; airway remodeling; base; cell type; cohort; disorder subtype; genome-wide; health care service utilization; improved; individual patient; macrophage; member; molecular phenotype; nano-string; novel; novel therapeutics; programs; therapeutic target

DESCRIPTION (provided by applicant): Asthma is a chronic inflammatory disease of the airways characterized by bronchial hyperreactivity and airway inflammation that increasingly afflicts the United States population. Individuals with severe asthma, suffer the most and drive at least 50% of the healthcare costs due to asthma in the U.S. To improve our understanding of this and other subgroups of this disease, the NHLBI initiated the Severe Asthma Research Program (SARP). This program identified 5 subgroups of asthma with different phenotypic features, of these, cluster 5 is characterized by severe irreversible airflow obstruction indicatin that airway remodeling is a key feature that discriminates the most severe subgroups of disease. Many of the molecular mechanisms that underlie airway remodeling have not been clearly elucidated in individuals with asthma. One of the main barriers to the characterization of airway remodeling has been the lack of safe access to the airway tissue itself in individuals with severe airflow impairment. In an effort to define novel pathways associated with the pathobiology of airway remodeling in asthma, our research team at the Yale Center for Asthma and Airways Disease (YCAAD) has developed a non-invasive protocol to measure genome-wide gene expression in the sputum of individuals with asthma. To identify regulatory genes that are associated with the development of airway remodeling and its relation with SARP clusters, we determined the effect of expression of microRNAs (miRNAs) on airflow obstruction in the YCAAD dataset. Analysis of miRNA expression in cells isolated from induced sputum with the Affymetrix 1.0 ST microarray identified an inverse correlation between hsa-miR-504 and baseline forced expiratory volume in 1 second (FEV1). In addition, hsa-miR-504 correlated positively with sputum levels of YKL-40, a chitinase-like protein we have previously shown to be associated with airway remodeling and increased asthma severity. A computational analysis overlapping the predicted hsa-miR-504 targets with the sputum gene expression profile, identified 90 transcripts that are likely to be hsa-miR-504 targets when a False Discovery Rate (FDR <0.05) threshold is used. Based on these exciting findings, we hypothesize that changes in the expression of hsa-miR-504 are indicative of asthma severity and that these changes lead to distinct changes in the expression of genes important in persistent inflammation and airway remodeling. To address this hypothesis we will focus on the following specific aims: 1). Determine the relationship between sputum hsa-miR-504, asthma and asthma severity. 2). Determine the cellular sources, immunophenotype and biologic targets of hsa-miR-504 in the sputum of individuals with asthma. 3). Identify a severe asthma phenotype associated with hsa-miR-504 and monitor its impact on adverse outcomes and changes in lung function through the longitudinal evaluation of subjects with asthma. (End of Abstract)

描述（由申请人提供）：哮喘是一种气道慢性炎症性疾病，其特征为支气管高反应性和气道炎症，日益困扰美国人口。患有严重哮喘的人，遭受的痛苦最大， 为了提高我们对这种疾病和这种疾病的其他亚组的理解，NHLBI发起了严重哮喘研究计划（SARP）。该项目确定了5个具有不同表型特征的哮喘亚组，其中，第5组的特征是严重的不可逆气流阻塞，表明气道重塑是区分疾病最严重亚组的关键特征。哮喘个体气道重塑的许多分子机制尚未明确阐明。表征气道重塑的主要障碍之一是在具有严重气流损伤的个体中缺乏对气道组织本身的安全访问。为了确定与哮喘气道重塑病理生物学相关的新途径，我们耶鲁大学哮喘和气道疾病中心（YCAAD）的研究小组开发了一种非侵入性方案，用于测量哮喘患者痰液中的全基因组基因表达。为了鉴定与气道重塑发展相关的调控基因及其与SARP簇的关系，我们确定了YCAAD数据集中microRNAs（miRNAs）表达对气流阻塞的影响。用Affyphidol 1.0 ST微阵列分析从诱导痰中分离的细胞中的miRNA表达，鉴定了hsa-miR-504与基线1秒用力呼气量（FEV 1）之间的负相关性。此外，hsa-miR-504与痰液中的YKL-40水平呈正相关，YKL-40是一种几丁质酶样蛋白，我们先前已证明与气道重塑和哮喘严重程度增加相关。将预测的hsa-miR-504靶标与痰液基因表达谱重叠的计算分析鉴定了当使用假发现率（FDR <0.05）阈值时可能是hsa-miR-504靶标的90种转录物。基于这些令人兴奋的发现，我们假设hsa-miR-504表达的变化是哮喘严重程度的指示，并且这些变化导致在持续性炎症和气道重塑中重要的基因表达的明显变化。为了解决这一假设，我们将重点关注以下具体目标：1）。确定痰液hsa-miR-504与哮喘和哮喘严重程度的关系。2）。确定哮喘患者痰液中hsa-miR-504的细胞来源、免疫表型和生物学靶点。3）。确定与hsa-miR-504相关的严重哮喘表型，并通过对哮喘受试者的纵向评估监测其对不良结局和肺功能变化的影响。 (End摘要）

项目成果

An endothelial microRNA-1-regulated network controls eosinophil trafficking in asthma and chronic rhinosinusitis.

• DOI: 10.1016/j.jaci.2019.10.031
• 发表时间: 2020-03
• 期刊: The Journal of allergy and clinical immunology
• 作者: Korde A;Ahangari F;Haslip M;Zhang X;Liu Q;Cohn L;Gomez JL;Chupp G;Pober JS;Gonzalez A;Takyar SS
• 通讯作者: Takyar SS

The DNA repair transcriptome in severe COPD.

严重 COPD 中的 DNA 修复转录组。

• DOI: 10.1183/13993003.01994-2017
• 发表时间: 2018
• 期刊: The European respiratory journal
• 作者: Sauler,Maor;Lamontagne,Maxime;Finnemore,Eric;Herazo-Maya,JoseD;Tedrow,John;Zhang,Xuchen;Morneau,JuliaE;Sciurba,Frank;Timens,Wim;Paré,PeterD;Lee,PattyJ;Kaminski,Naftali;Bossé,Yohan;Gomez,JoseL
• 通讯作者: Gomez,JoseL