Discovery of GPCR-active natural products and their biosynthetic genes from the human associated bacteria

从人类相关细菌中发现具有 GPCR 活性的天然产物及其生物合成基因

• 批准号: 10198774
• 负责人: SEAN F BRADY
• 金额: $ 38.14万
• 依托单位: ROCKEFELLER UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-07-14 至 2023-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10198774
• 关键词: Affect; American; Anabolism; Bacteria; Bacterial Artificial Chromosomes; Biological; Biological Assay; Biological Process; Brain; Candidate Disease Gene; Cell Proliferation; Chemicals; Cirrhosis; Cognition; Collection; Complex; Development; Diabetes Mellitus; Disease; Drug Targeting; Engineering; Environment; Eukaryotic Cell; Family; Fractionation; G-Protein-Coupled Receptors; GPR3 gene; GPR4 gene; Gene Cluster; Genes; Genetic Recombination; Grant; Health; Human; Human Biology; Human Microbiome; Immune system; Immunity; Individual; Inflammation; Inflammatory Bowel Diseases; Irritable Bowel Syndrome; Knowledge; Ligands; Link; Literature; Metabolism; Microbe; Modeling; Molecular Weight; Mus; Mutagenesis; Natural Products; Neuraxis; Obesity; Organism; Orphan; Outcome; Pathway interactions; Physiological Processes; Physiology; Play; Population; Probiotics; Process; Production; Publishing; Regulation; Reporting; Resources; Risk; Role; Shapes; Signal Transduction; Source; Structure; Surveys; Therapeutic; Work; Yeasts; autism spectrum disorder; base; commensal bacteria; design; genetic manipulation; high throughput screening; human disease; human microbiota; immunoregulation; in vivo; insight; microbiome; microbiome sequencing; novel; novel therapeutics; receptor; screening; small molecule; therapy development

Project summary: The development of therapies inspired by the human microbiome is at least in part limited by our lack of understanding of how human associated (HA-) bacteria communicate with their human host. Human microbiome sequencing studies show strong correlations between changes in bacterial populations and human health. Despite these correlations and the evidence linking HA-bacteria to disease in mice, the mechanistic details of how HA-bacteria specifically affect mammalian physiology remain largely unknown. In other environments, bacteria are known to rely heavily on low molecular weight compounds (small molecules or natural products) to interact with other organisms. Similarly, we expect that HA-bacteria are likely to use small molecules to interact with their human hosts. Mounting evidence suggests that, although each human microbiome is composed of a complex collection of bacteria, a much smaller number of species is highly prevalent across the majority of individuals. While we don't know exactly which HA-bacteria are responsible for maintaining human health or causing disease, we hypothesize that small molecules produced by these commonly encountered HA-bacteria are likely to play an important role in regulating human physiology. The central aim of this proposal is to screen metabolites produced by the most commonly observed human HA- bacteria in high-throughput GPCR activity assays to identify GPCR-active small molecules and the biosynthetic gene clusters that produce them. GPCRs constitute the largest family of eukaryotic trans-membrane receptors. They are known to play diverse and profound roles in human biology and are prone to regulation by small molecules. Based on the fact that GPCRs play such an extensive role in transforming chemical information from the environment into biological signals in eukaryotic cells, I believe that HA-bacteria likely affect host physiology through the production of small molecules that interact with GPCRs. The two Aims of this proposal will result in (1) the identification, isolation, and structure elucidation of HA-bacteria-encoded metabolites that interact with diverse GPCRs and (2) the characterization of the biosynthetic gene clusters for these novel metabolites. These studies will help to illuminate the mechanistic details of how HA-bacteria shape human health and lay the groundwork for developing HA-bacteria that produce GPCR-active ligands into therapies for controlling human physiology. The human microbiome is reported to influence complex pathophysiological processes ranging from the regulation of the immune system to the development of the brain and the central nervous system. Changes in human HA-bacterial populations are associated with diseases that affect over 200 million Americans including obesity, diabetes, inflammatory bowel disease, autism, irritable bowel syndrome, and cirrhosis among many others. Therapies derived from human HA-bacteria have potential utility in controlling diverse basic biological processes and human diseases.

项目摘要：受人类微生物组启发的疗法的发展至少在一定程度上受到限制 我们对人类相关（HA-）细菌如何与人类宿主交流缺乏了解。 人类微生物组测序研究显示细菌种群变化之间存在强相关性 和人类健康。尽管有这些相关性和将HA细菌与小鼠疾病联系起来的证据， HA-细菌如何特异性影响哺乳动物生理学的机制细节在很大程度上仍然未知。在 在其他环境中，已知细菌严重依赖低分子量化合物（小分子 或天然产物）与其他生物体相互作用。同样，我们预计HA细菌可能会使用 小分子与人类宿主相互作用。越来越多的证据表明，尽管每个人 微生物组是由复杂的细菌集合组成的，数量少得多的物种高度 在大多数人中普遍存在。虽然我们不知道到底是哪种HA细菌导致了 维持人类健康或引起疾病，我们假设这些产生的小分子 常见的HA-细菌可能在调节人体生理学中起重要作用。的 该建议的中心目的是筛选最常见的人HA产生的代谢物， 细菌在高通量GPCR活性测定，以确定GPCR活性的小分子和生物合成 产生它们的基因簇。GPCR构成真核生物跨膜受体的最大家族。 已知它们在人类生物学中发挥着多种多样和深远的作用，并且易于受到小分子的调节。 分子。基于GPCR在化学信息转化中发挥着广泛作用的事实， 从环境中转化为真核细胞中的生物信号，我认为HA-细菌可能影响宿主 通过产生与GPCR相互作用的小分子来调节生理学。该提案的两个目的 将导致（1）HA细菌编码的代谢物的鉴定、分离和结构阐明， 与不同的GPCR相互作用和（2）这些新的生物合成基因簇的表征 代谢物。这些研究将有助于阐明HA细菌如何塑造人类的机制细节， 健康，并为开发产生GPCR活性配体的HA细菌奠定基础， 控制着人体的生理机能据报道，人类微生物组影响复杂的病理生理学， 从免疫系统的调节到大脑和中枢神经系统的发育， 神经系统人类HA细菌种群的变化与影响200多人的疾病有关 包括肥胖症、糖尿病、炎症性肠病、自闭症、肠易激综合征、 以及肝硬化来源于人HA-细菌的疗法具有潜在的实用性， 控制各种基本生物过程和人类疾病。