Core D: Computational
Core D: Computational
批准号:
10225362
负责人:
Alexander Hoffmann
金额:
$12.47万
依托单位国家:
美国
项目类别:
财政年份:
2017
资助国家:
美国
项目状态:
已结题
起止时间:
2017-08-01 至 2024-07-31
关键词:
AreaBiological MarkersBiometryCaliforniaCellsClinicalCollaborationsComputer ModelsCore FacilityCustomCytomegalovirusDataData AnalysesData SetDevelopmentDimensionsDiscriminant AnalysisEducationGene ExpressionImmuneImmune responseInfectious AgentInfrastructureKidney TransplantationLos AngelesLymphocyteManuscriptsMapsMeasurementMeasuresMethodologyModelingMolecularNatural Killer CellsOrgan TransplantationOutcomePathway AnalysisPathway interactionsPatternPhasePhenotypePhysiological ProcessesPopulationPreparationPrimary InfectionProteomicsQuality ControlResearchResearch PersonnelResearch Project GrantsResource SharingRiskSan FranciscoServicesSignal PathwaySolidStatistical ModelsTraining and EducationTransplant RecipientsUniversitiesViralVirusdata infrastructuredata managementdata modelingdiverse datakinetic modelmembermultidimensional datanetwork modelsnext generation sequencingpathogenpredictive markerpredictive modelingtooltranscriptome sequencing
中文摘要
核心D:计算
总结/摘要
该U19申请提出了三个研究项目和四个核心共享资源,由以下人员发起和领导:
加州洛杉矶大学(UCLA)和加州旧金山弗朗西斯科的调查人员
(UCSF),围绕绘制实体器官移植中的CMV免疫反应的主题。的
计算核心提供正确分析和网络建模所需的计算专业知识
其他核心和项目生成的数据。将在以下领域提供服务:
高通量分子数据预处理的中央基础设施
用于数据解释和提高预测能力的简化方法。
利用途径分析来解释RNA测序数据。
解释多变量数据和识别预测特征的统计方法。
对淋巴细胞和病毒动力学进行建模,以解释免疫表型数据集。
协助联合会成员的教育和手稿准备。
英文摘要
CORE D: Computational
SUMMARY/ABSTRACT
This U19 application proposes three research Projects and four Cores for shared resources initiated and led by
investigators at the University of California Los Angeles (UCLA) and the University of California San Francisco
(UCSF), centered around the theme of mapping CMV immune responses in solid organ transplantation. The
Computational Core provides computational expertise required for the proper analysis and network modelling
of data generated by other Cores and Projects. Services will be provided in the following areas:
Central infrastructure for data preprocessing of high throughput molecular data
Dimensionality reduction methodologies for data interpretation and increasing predictive power.
Leverage pathway analysis to interpret RNA sequencing data.
Statistical methodologies for interpreting multivariate data and identify predictive features.
Modeling the lymphocyte and viral dynamics to interpret immune-phenotyping datasets.
Assistance with education of consortium members and manuscript preparation.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Characterizing functional states of macrophages via their stimulus-responses
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批准号:10737449
-
项目类别:
-
资助金额:$71.0万
-
财政年份:2023
-
负责人:Alexander Hoffmann
-
依托单位:
Bruins in Genomics: Dental, Oral & Craniofacial Research Training Program (BIG DOC)
-
批准号:10540402
-
项目类别:
-
资助金额:$25.7万
-
财政年份:2021
-
负责人:Alexander Hoffmann
-
依托单位:
Bruins in Genomics: Dental, Oral & Craniofacial Research Training Program (BIG DOC)
-
批准号:10328979
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项目类别:
-
资助金额:$31.72万
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财政年份:2021
-
负责人:Alexander Hoffmann
-
依托单位:
Cell decision underlying B-cell immune responses
-
批准号:10330546
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项目类别:
-
资助金额:$41.9万
-
财政年份:2018
-
负责人:Alexander Hoffmann
-
依托单位:
The NFkB System in Dendritic Cells
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批准号:9891942
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项目类别:
-
资助金额:$43.43万
-
财政年份:2018
-
负责人:Alexander Hoffmann
-
依托单位:
Cell decision underlying B-cell immune responses
-
批准号:10094180
-
项目类别:
-
资助金额:$42.7万
-
财政年份:2018
-
负责人:Alexander Hoffmann
-
依托单位:
The NFkB System in Dendritic Cells
-
批准号:10375381
-
项目类别:
-
资助金额:$41.52万
-
财政年份:2018
-
负责人:Alexander Hoffmann
-
依托单位:
Core D: Computational
-
批准号:10000880
-
项目类别:
-
资助金额:$11.91万
-
财政年份:2017
-
负责人:Alexander Hoffmann
-
依托单位:
Coordinated dynamic regulation and function of IRF transcription factors
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批准号:10155390
-
项目类别:
-
资助金额:$39.0万
-
财政年份:2017
-
负责人:Alexander Hoffmann
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依托单位:
NFkB Signaling in Macrophages
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批准号:10054972
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项目类别:
-
资助金额:$38.5万
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财政年份:2016
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负责人:Alexander Hoffmann
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依托单位:
Roles of RelB in tuning inflammatory and innate immune responses
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批准号:9228009
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项目类别:
-
资助金额:$23.1万
-
财政年份:2016
-
负责人:Alexander Hoffmann
-
依托单位:
Understanding dynamical coding by NFkB
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批准号:9223713
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项目类别:
-
资助金额:$61.07万
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财政年份:2016
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负责人:Alexander Hoffmann
-
依托单位:
NGS Data Analysis Skills for the Biosciences Pipeline
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批准号:9044430
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项目类别:
-
资助金额:$16.0万
-
财政年份:2015
-
负责人:Alexander Hoffmann
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依托单位:
Epigenomic control of RNA splicing
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批准号:8815662
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项目类别:
-
资助金额:$30.8万
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财政年份:2014
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负责人:Alexander Hoffmann
-
依托单位:
Epigenomic control of RNA splicing
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批准号:8921202
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项目类别:
-
资助金额:$30.8万
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财政年份:2014
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负责人:Alexander Hoffmann
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依托单位:
SEED PROJECT
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批准号:8151848
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项目类别:
-
资助金额:$15.45万
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财政年份:2010
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负责人:Alexander Hoffmann
-
依托单位:
Center for Systems Biology of Cellular Stress Responses
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批准号:8145605
-
项目类别:
-
资助金额:$297.25万
-
财政年份:2010
-
负责人:Alexander Hoffmann
-
依托单位:
Center for Systems Biology of Cellular Stress Responses
-
批准号:8332812
-
项目类别:
-
资助金额:$295.64万
-
财政年份:2010
-
负责人:Alexander Hoffmann
-
依托单位:
Center for Systems Biology of Cellular Stress Responses
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批准号:8608685
-
项目类别:
-
资助金额:$5.44万
-
财政年份:2010
-
负责人:Alexander Hoffmann
-
依托单位:
CORE E: EDUCATION
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批准号:8151886
-
项目类别:
-
资助金额:$3.09万
-
财政年份:2010
-
负责人:Alexander Hoffmann
-
依托单位:
海外基金