Overcoming drug resistance using small molecule activators of protein phosphatase 2A

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Uncontrolled cell proliferation resulting from aberrant activity of cell cycle proteins is a hallmark of cancer. Overexpression of the mitogen sensor cyclin D1 is among the most frequent abnormalities in tumors, enhancing the activity of cyclin dependent kinases 4 and 6 (CDK4/6) to drive G1→S phase progression and promote cell survival and chemoresistance. Increased expression of D-type cyclins is required not only for tumorigenesis but also for tumor maintenance and progression. Thus, aberrant cyclin D-CDK4/6 activity represents an actionable target for cancer therapy and D-type cyclin function is among the top therapeutic targets for cancer management. Inhibitors of CDK4/6 activity have shown promise in the clinic and palbociclib, abemaciclib, and ribociclib are FDA-approved for use in patients. Several hundred clinical trials are currently ongoing to evaluate the antitumor effects of these agents in a broad spectrum of cancer types. However, the therapeutic promise of CDK4/6 inhibitors is dampened by inevitable emergence of resistance. Recent seminal studies have identified a novel mechanism of resistance to these agents mediated by deficiency of autophagy and beclin 1 regulator 1 (AMBRA1), an E3 ligase adaptor and master regulator of cyclin D1, D2, and D3 protein stability. Loss or mutation of AMBRA1 is seen in a significant subset of human cancers, in association with poor patient survival. AMBRA1 deficiency promotes the accumulation of D-type cyclins, a hyperproliferative phenotype, and tumorigenesis, while reducing the sensitivity of tumor cells to all three FDA-approved CDK4/6 inhibitors. Evidence that upregulation of D-type cyclins and the formation of non-canonical cyclin D-CDK2 and p27-cyclin D-CDK4 complexes underpins resistance to these agents forms the basis of this proposal. Strategies are proposed to explore the mechanism-driven application of Small Molecule Activators of PP2A (SMAPs) for overcoming resistance to CDK4/6 inhibitors in the context of AMBRA1 deficiency. SMAPs are a novel class of antitumor agents that selectively activate a subset of PP2A holoenzymes for potent tumor suppression in a variety of cancer types. This project builds on our discovery that SMAPs potently downregulate cyclins D1, D2 and D3 in all cell types tested. Importantly, SMAPs act as AMBRA1-independent D-type cyclin ‘degraders,’ promoting rapid proteolysis of these molecules via a proteasome-dependent mechanism that remains functional following loss of AMBRA1. Based on these findings, we hypothesize that combining CDK4/6 inhibitor treatment with a SMAP ‘D-type cyclin degrader’ will enhance antitumor activity and reverse resistance to CDK4/6 inhibitors driven by AMBRA1 deficiency. Proof-of-concept studies will be performed in two Specific Aims: (1) Explore the effects of combining CDK4/6 inhibitors and SMAPS in the context of AMBRA1-deficiency, and (2) Evaluate the effects of SMAP- CDK4/6 inhibitor combinations in tumor models in vivo. Importantly, in addition to addressing consequences of AMBRA1-deficiency, our proof-of-concept findings are anticipated to be broadly applicable to tumors harboring increased levels of D-type cyclins and aberrant CDK activity resulting from other tumor-associated alterations.