Exploration of the oropharyngeal resistome as a reservoir of antimicrobial resistance in Neisseria gonorrhoeae

口咽耐药组作为淋病奈瑟氏菌耐药性库的探索

• 批准号: 10524687
• 负责人: Olusegun Olasunkanmi Soge
• 金额: $ 22.33万
• 依托单位: UNIVERSITY OF WASHINGTON
• 依托单位国家: 美国
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-07-01 至 2024-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10524687
• 关键词: 16S ribosomal RNA sequencing; Address; Anatomy; Antibiotic Resistance; Antibiotics; Antimicrobial Resistance; Antimicrobial susceptibility; Bacteria; Bioinformatics; COVID-19 pandemic; Case Study; Ceftriaxone; Cephalosporin Resistance; Cephalosporins; Clinic; Clinical; Coculture Techniques; County; Cross-Sectional Studies; Data; Development; Diagnosis; Enrollment; Environment; Epidemic; Event; Evolution; Exposure to; Fluoroquinolones; Frequencies; Gene Mutation; Generations; Genes; Genetic; Genetic Determinism; Genetic Markers; Goals; Gonorrhea; Guidelines; HIV; Health Priorities; Human; In Vitro; Incidence; Infection; Institutes; Knowledge; Laboratories; MALDI-TOF Mass Spectrometry; Macrolides; Metagenomics; Methods; Minimum Inhibitory Concentration measurement; Multi-Drug Resistance; Mutation; Neisseria; Neisseria gonorrhoeae; Oropharyngeal; Patients; Penicillins; Pharmaceutical Preparations; Phenotype; Play; Population; Prevalence; Prevention; Public Health; Quality Control; Reporting; Resistance; Resistance development; Resistance profile; Risk; Role; Sampling; Sexual Health; Sexually Transmitted Diseases; Specimen; System; Testing; Tetracyclines; Therapeutic; Time; Treatment Protocols; Woman; Work; antimicrobial; base; commensal bacteria; effective therapy; emerging antimicrobial resistance; global health; high risk; improved; insight; men; men who have sex with men; metagenomic sequencing; microbial; microbiota; next generation sequencing; novel; pharyngeal gonorrhea; recruit; resistance gene; resistance mechanism; sex

Project Summary/Abstract Gonorrhea is one of the most common sexually transmitted infections (STIs) globally, and prior to the COVID- 19 pandemic, the second most common reportable infection in the U.S. In the past decade, there have been significant increases in gonorrhea among men who have sex with men (MSM) in the US, with a 375% increase observed from 2010–2018. At the same time, the percentages of antimicrobial-resistant Neisseria gonorrhoeae (AMR-NG) continues to increase markedly in MSM. Despite the significant increase in the prevalence of AMR- NG, the drivers and reservoirs of AMR-NG especially for oropharyngeal gonorrhea commonly diagnosed in MSM and responsible for all the reported cases of failed ceftriaxone treatment are yet to be fully elucidated. The oropharynx is reservoir for AMR-NG because it harbors a large microbiota and repertoire of AMR genes. The overall goal of this proposal is to describe comprehensively the oropharyngeal resistome of men who are a priority population for STI and HIV control and prevention. In Aim 1, we will use culturomics to identify NG and commensal bacteria, determine their AMR profiles, and use the phenotypic AMR data for stringent quality control of our oropharyngeal resistome profiling (Aim 2). In Aim 2, we will use an unbiased culture-independent metagenomic sequencing and comprehensive bioinformatic analysis to determine the oropharyngeal resistome of MSM and MSW. In Aim 3, we will sequence 150 commensal Neisseria spp. paired with NG isolates obtained from the same patient when isolated (Aim 1) to demonstrate that they share the same genetic markers of AMR. We will define the genetic mechanisms of AMR among multidrug-resistant (MDR) commensal Neisseria spp., and investigate the relative frequency of in vitro transfer of AMR from 10 different species of commensal Neisseria to fully susceptible and genetically diverse recipient strains of NG. We expect that the results from these studies will provide urgently needed data on the repertoire of AMR genes and genetic determinants facilitating the evolution of NG resistance to antibiotics recommended for gonorrhea treatment including ceftriaxone, the last remaining highly effective treatment option for gonorrhea, and paving the way for improved proactive identification and mitigation of emerging AMR threats. Our data will immediately contribute to the surveillance of AMR threats in MSM disproportionately impacted by gonorrhea and HIV epidemics, and guide efforts to develop novel antimicrobials for combatting MDR-NG. Public Health Significance. This study will define the magnitude and diversity AMR in the human oropharynx, an anatomic site thought to play a central role in the emergence of AMR-NG, and will provide new insights into which bacteria and under what circumstances NG may acquire AMR. This knowledge will provide important insights into how AMR-NG develops, critically important information in developing strategies to contain the threat of AMR-NG and for development of novel antimicrobials.

项目总结/摘要 淋病是全球最常见的性传播感染（STI）之一，在COVID-19之前， 19大流行，在美国第二个最常见的报告感染，在过去的十年中，有 美国男男性行为者（MSM）淋病发病率显著增加，增幅为375% 从2010年到2018年观察。同时，耐药淋球菌的百分比 （AMR-NG）在MSM中继续显著增加。尽管AMR的患病率显著增加， NG是AMR-NG的驱动者和储存者，特别是在MSM中常见的口咽淋病 并对所有报告的头孢曲松治疗失败的病例负责尚未完全阐明。的 口咽是AMR-NG的储存库，因为它含有大量的微生物群和AMR基因库。的 该提案的总体目标是全面描述男性口咽部抵抗组， 重点人群的性传播感染和艾滋病毒控制和预防。在目标1中，我们将使用文化组学来识别NG， 微生物，确定其AMR谱，并使用表型AMR数据进行严格的质量控制 我们的口咽耐药基因组分析（Aim 2）。在目标2中，我们将使用无偏见的文化无关 宏基因组测序和综合生物信息学分析，以确定口咽耐药基因组 MSM和MSW。在目标3中，我们将对150个细菌奈瑟氏菌属物种进行测序。与获得的NG分离株配对 分离时来自同一患者（目的1），以证明它们具有相同的AMR遗传标记。 我们将确定多重耐药（MDR）的奈瑟氏球菌属中AMR的遗传机制， 并研究了10种不同植物中AMR体外转移的相对频率 奈瑟氏球菌完全易感和遗传多样性的NG受体菌株。我们预计， 这些研究将提供急需的AMR基因和遗传决定因素的数据 促进NG对推荐用于淋病治疗的抗生素的耐药性的演变，包括 头孢曲松，最后剩下的高效治疗淋病的选择，并铺平了道路， 主动识别和缓解新出现的AMR威胁。我们的数据将立即有助于 监测受淋病和艾滋病毒流行不成比例影响的MSM中的AMR威胁，并指导 努力开发用于对抗MDR-NG的新型抗菌剂。 公共卫生意义。本研究将确定人类口咽部AMR的幅度和多样性， 一个被认为在AMR-NG的出现中发挥核心作用的解剖部位，并将为以下方面提供新的见解 哪些细菌以及在什么情况下NG可能获得AMR。这些知识将提供重要的 了解AMR-NG如何发展，这是制定遏制威胁战略的重要信息 AMR-NG和新型抗菌剂的开发。