Mechanistic studies of transcription initiation and elongation functions of an RNA polymerase II variant, Pol II(G), that is implicated in development and cancer
RNA 聚合酶 II 变体 Pol II(G) 的转录起始和延伸功能的机制研究,该变体与发育和癌症有关
基本信息
- 批准号:10670981
- 负责人:
- 金额:$ 38万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2022
- 资助国家:美国
- 起止时间:2022-07-25 至 2027-06-30
- 项目状态:未结题
- 来源:
- 关键词:AblationAcuteAlbuminsBindingBiochemicalBiologicalBiological AssayBreast Cancer CellBreast CarcinomaCancer Cell GrowthCarcinomaCell CycleCell Differentiation processCell LineCellsChIP-seqChromatinComplementComplexCryoelectron MicroscopyDevelopmentDown-RegulationElongation FactorEmbryoEmbryonic DevelopmentEnhancersEventExperimental DesignsGene ActivationGenesGeneticGenetic TranscriptionGenetic studyGrowthHep3BHepatocarcinogenesisHepatocyteHumanImmobilizationIn VitroIndividualInterventionLiverMaintenanceMalignant NeoplasmsMass Spectrum AnalysisMediatingMediatorModelingMolecular Mechanisms of ActionMusPathologyPeptide Initiation FactorsPhysiologicalPhysiological ProcessesPlayPolymerasePrimary carcinoma of the liver cellsProcessProductivityPropertyProteinsRNA Polymerase IIRecombinantsRegulationRepressionRoleSignal PathwaySiteStructureTP53 geneTherapeuticTissuesTranscription CoactivatorTranscription ElongationTranscription Factor TFIIBTranscription InitiationTranscriptional Elongation FactorsTranscriptional RegulationVariantYeastscancer cellcell growthcofactorembryonic stem cellflygene repressionhuman diseaseinsightlipid metabolismliver developmentmalignant breast neoplasmmultiple omicsnegative elongation factornovelp53 Signaling Pathwaypancreatic differentiation 2 proteinpolypeptidepremalignantpreventprogramspromoterreconstitutionrecruittranscription factortranscription factor S-IItranscription factor TFIIF
项目摘要
Eukaryotic RNA polymerase II (Pol II) plays a pivotal role in transcription. Normal physiological processes
depend upon precise transcriptional controls, whereas transcriptional dysregulation is the basis of numerous
pathologies that include cancer. Pol II recruitment to specific promoters is regulated by multiple cofactors that
include the multi-subunit Mediator, which directly binds both to enhancer/promoter-bound
transcriptional activators and to Pol II to facilitate gene activation. Following initiation and promoter escape,
Pol II remains subject to regulation by multiple elongation factors, acting either at Pol II pause-release or
productive elongation steps. Pol II(G) is a recently described form of Pol II that contains the tightly
associated, metazoan-specific Gdown1 polypeptide along with the normal 12 subunits. Our genetic-
based studies of Pol II(G) have demonstrated that Gdown1 is essential for early embryonic development
and for cell-specific transcription in quiescent hepatocytes, in which heavy localization to gene bodies of
highly expressed liver-specific genes (e.g., albumin) is indicative of elongation functions and in which ablation
leads to downregulation of both liver-specific and lipid metabolism genes, cell cycle re-entry and (in the
absence of p53) a premalignant type of transformation. Studies in hepatocarcinoma and breast cancer cells
have also indicated a key role for Gdown1 in cell growth and in expression of lipid metabolism genes, which
are generally important for maintenance of cancer cell growth. Our biochemical studies have revealed that
the Pol II-associated Gdown1 conditionally represses basal (activator- and Mediator-independent)
transcription initiation by preventing association of TFIIB and TFIIF with Pol II, thereby establishing a potential
checkpoint and eliciting a strong requirement for activator-bound Mediator to overcome repression. Our
structural studies have defined Gdown1 interaction sites on Pol II and provided clues regarding Mediator
interactions that might facilitate its reversal of the conditionally repressed initiation capacity of Pol II(G),
although the underlying mechanism remains unclear. With the general objective of understanding the
molecular mechanisms of action of Pol II(G) in conjunction with its roles in breast cancer and hepatocarcinoma
cells, especially on Gdown1-regulated cell-specific and lipid metabolism genes, as a potential basis for new
cancer therapeutics, our specific aims are: (i) to investigate the mechanisms underlying Mediator-dependent
transcription initiation and post-initiation events by Pol II(G), including concomitant, newly described
interactions with general transcription factors and elongation factor TFIIS, using powerful in vitro transcription
and immobilized template assays and CX-MS and cryo-EM structural analyses of interacting complexes and (ii)
to investigate Gdown1 functions in hepatocarcinoma cells in promoter-proximal pausing, pause release and
transcriptional processivity using (a) a multiomics cell-based approach in conjunction with acute degradation of
Gdown1 and (b) biochemical (in vitro reconstitution of these processes with purified factors and recombinant
chromatin templates) and structural (CX-MS and cryo-EM) analyses of Pol II(G) elongation factor complexes.
真核RNA聚合酶II(Pol II)在转录中起关键作用。正常生理过程
依赖于精确的转录控制,而转录失调是许多转录调控的基础。
包括癌症在内的疾病Pol II向特定启动子的募集受多种辅因子调节,
包括多亚基介体,其直接结合增强子/启动子结合的
转录激活因子和Pol II以促进基因激活。在起始和启动子逃逸之后,
Pol II仍然受到多种延伸因子的调节,这些因子在Pol II暂停释放时起作用,
生产性延伸步骤。Pol II(G)是最近描述的Pol II的形式,其包含紧密的
相关的后生动物特异性Gdown 1多肽沿着正常的12个亚基。我们的基因-
基于Pol II(G)的研究表明,Gdown 1对早期胚胎发育至关重要
和细胞特异性转录在静止的肝细胞,其中重定位于基因体,
高度表达的肝特异性基因(例如,白蛋白)指示延长功能,并且其中消融
导致肝脏特异性基因和脂质代谢基因的下调,细胞周期重新进入,
p53缺失)癌前转化类型。肝癌和乳腺癌细胞的研究
也表明Gdown 1在细胞生长和脂质代谢基因表达中的关键作用,
通常对维持癌细胞生长很重要。我们的生化研究表明,
Pol II相关的Gdown 1有条件地抑制基础(激活剂和介体非依赖性)
通过阻止TFIIB和TFIIF与Pol II的结合来启动转录,从而建立潜在的
检查点,并引发对激活剂结合介体的强烈需求以克服阻遏。我们
结构研究已经确定了Pol II上的Gdown 1相互作用位点,并提供了关于Mediator的线索
可能促进其逆转Pol II(G)的条件性抑制的起始能力的相互作用,
尽管潜在的机制仍不清楚。总的目标是了解
Pol II(G)作用的分子机制及其在乳腺癌和肝癌中的作用
细胞,特别是Gdown 1调节的细胞特异性和脂质代谢基因,作为新的潜在基础。
癌症治疗学,我们的具体目标是:(i)研究介体依赖性的潜在机制
Pol II(G)的转录起始和起始后事件,包括伴随的、新描述的
与一般转录因子和延伸因子TFIIS的相互作用,使用强大的体外转录
和相互作用复合物的固定化模板测定和CX-MS和cryo-EM结构分析,以及(ii)
研究Gdown 1在肝癌细胞中启动子近端暂停、暂停释放和
使用(a)基于多组学细胞的方法结合急性降解
Gdown 1和(B)生物化学(用纯化的因子和重组体体外重建这些过程
染色质模板)和结构(CX-MS和cryo-EM)分析。
项目成果
期刊论文数量(1)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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ROBERT G ROEDER其他文献
ROBERT G ROEDER的其他文献
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{{ truncateString('ROBERT G ROEDER', 18)}}的其他基金
Mechanistic studies of transcription initiation and elongation functions of an RNA polymerase II variant, Pol II(G), that is implicated in development and cancer
RNA 聚合酶 II 变体 Pol II(G) 的转录起始和延伸功能的机制研究,该变体与发育和癌症有关
- 批准号:
10503451 - 财政年份:2022
- 资助金额:
$ 38万 - 项目类别:
Functions and mechanisms of transcriptional coactivator OCA-B in B cell development and lymphomagenesis
转录共激活因子 OCA-B 在 B 细胞发育和淋巴瘤发生中的功能和机制
- 批准号:
10303052 - 财政年份:2019
- 资助金额:
$ 38万 - 项目类别:
Molecular mechanisms of estrogen receptor-dependent transcription regulation
雌激素受体依赖性转录调控的分子机制
- 批准号:
10545758 - 财政年份:2019
- 资助金额:
$ 38万 - 项目类别:
Molecular mechanisms of estrogen receptor-dependent transcription regulation
雌激素受体依赖性转录调控的分子机制
- 批准号:
10322679 - 财政年份:2019
- 资助金额:
$ 38万 - 项目类别:
Biological roles and Mediator-dependent transcription mechanisms of RNA polymerase II(G)
RNA聚合酶II(G)的生物学作用和介体依赖性转录机制
- 批准号:
9009066 - 财政年份:2015
- 资助金额:
$ 38万 - 项目类别:
Transcriptional regulatory mechanisms in B cell development and leukemogenesis
B 细胞发育和白血病发生中的转录调控机制
- 批准号:
8564107 - 财政年份:2013
- 资助金额:
$ 38万 - 项目类别:
Transcriptional regulatory mechanisms in B cell development and leukemogenesis
B 细胞发育和白血病发生中的转录调控机制
- 批准号:
8719062 - 财政年份:2013
- 资助金额:
$ 38万 - 项目类别:
Transcriptional regulatory mechanisms in B cell development and leukemogenesis
B 细胞发育和白血病发生中的转录调控机制
- 批准号:
9271811 - 财政年份:2013
- 资助金额:
$ 38万 - 项目类别:
Function and targeting of a stable transcription factor complex in leukemia
白血病中稳定转录因子复合物的功能和靶向
- 批准号:
8513945 - 财政年份:2011
- 资助金额:
$ 38万 - 项目类别:
Function and targeting of a stable transcription factor complex in leukemia
白血病中稳定转录因子复合物的功能和靶向
- 批准号:
8163071 - 财政年份:2011
- 资助金额:
$ 38万 - 项目类别:
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