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Using Integrative Omics as Biomarkers and Diagnostic Tools for SIDS

使用综合组学作为 SIDS 的生物标志物和诊断工具

基本信息

批准号：
10686407
负责人：
FERN R HAUCK
金额：
$ 43.56万
依托单位：
UNIVERSITY OF VIRGINIA
依托单位国家：
美国
项目类别：
财政年份：
2020
资助国家：
美国
起止时间：
2020-09-01 至 2024-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/10686407
关键词：
1 year old Address Affect African American Alaska Native American Indians Architecture Autopsy Back to Sleep Biological Markers Blood specimen Cardiac Cardiovascular system Cause of Death Cessation of life Chicago Childhood Classification Clinic Clinical Code Cohort Studies Collaborations Collection Congenital Abnormality Coupled DNA Methylation Data Death Rate Diagnosis Diagnostic tests Disease Early Diagnosis Environment Environmental Risk Factor Epidemiology Epigenetic Process Ethnic Origin European Functional disorder Future Gene Expression Gene Expression Profile Genes Genetic Genetic Code Genetic Predisposition to Disease Genomics Goals Grief reaction Heart Hispanic Hypermethylation Incidence Individual Infant Infant Mortality Intrinsic factor Investigation Lead Liver Medical Examiners Methods Methylation Modernization Molecular Molecular Abnormality Not Hispanic or Latino Outcome Parents Pathology Pathway interactions Pattern Phenotype Plasma Preventive measure RNA Rare Diseases Recording of previous events Research Risk Risk Factors Risk Reduction Role Sampling Sequence Analysis Sleep Socioeconomic Factors Specimen Sudden infant death syndrome Susceptibility Gene Syndrome Technology Testing Tissues Uncertainty United States United States National Institutes of Health Variant adjudication attributable mortality body system clinical diagnostics cohort diagnostic tool diagnostic value differential expression epigenome exome exome sequencing gene function genetic analysis genome-wide high risk high risk infant infant death insight metabolomics mortality mortality risk multiple omics neonatal period next generation sequencing novel novel marker predictive marker screening tool transcriptome sequencing transcriptomics

项目摘要

Project Summary Sudden Infant Death Syndrome (SIDS) is the second leading cause of death (closely behind congenital and genetic abnormalities), in the postneonatal period (infants 1 month to 1 year of age), despite declines in incidence of over 50% following the Back to Sleep (now called the Safe to Sleep) risk reduction campaign. In 2017, 1400 infants in the US died of SIDS. Extensive research has identified a number of epidemiological risk factors for SIDS, and more recent research has begun to provide evidence of a potential role for genetic susceptibility in the pathophysiology of the disorder. In the United States, African American and American Indian/Alaska Native babies, in particular are at higher risk for SIDS. Advances in technology now allow for more exhaustive interrogations of genomic contributors to disease. The goal of this proposal is to comprehensively evaluate genetic and epigenetic determinates of SIDS and identify gene expression, DNA methylation and metabolomics profiles that might serve as novel biomarkers in infants at greater risk of death from SIDS. We will utilize liver, heart and blood specimens from the Chicago Infant Mortality Study (CIMS), the largest known collection of cardiac tissue from SUID deaths in the US and heart and blood specimens from the NIH NeuroBioBank (NBB) to investigate genetic, epigenetic, and transcriptomic influences of SIDS. We will employ an omics approach encompassing next generation sequencing (exome plus RNA), genome wide epigenetics, and metabolomics profiling to identify novel biomarkers that are predictive of SIDS. These findings could lead to diagnostic tests and early detection of high risk infants, resulting in preventative measures to eliminate SIDS. This study will also be the first to successfully use an integrative –Omics approach to address genetic, epigenetic, and metabolomics contributors for SIDS.

项目摘要婴儿猝死综合征(SID)是第二大死亡原因(紧随先天性和遗传异常)，在新生儿后时期(婴儿1个月至1岁)，尽管在恢复睡眠(现在称为安全睡眠)降低风险运动之后，发病率超过50%。在……里面 2017年，美国有1400名婴儿死于小岛屿发展中国家。广泛的研究已经确定了一些流行病风险小岛屿发展中国家的因素，最近的研究已经开始提供证据，证明基因的潜在作用在疾病的病理生理学上的易感性。在美国，非洲裔美国人和美国人特别是印度/阿拉斯加土生土长的婴儿患小岛屿发展中国家的风险更高。技术的进步现在允许对疾病的基因组贡献者进行更详尽的询问。这项提议的目标是综合评估小岛屿发展中国家的遗传和表观遗传决定因素并鉴定基因表达、DNA 甲基化和代谢组学特征可能作为死亡风险较高婴儿的新生物标志物来自小岛屿发展中国家。我们将使用来自芝加哥婴儿死亡率研究(CIMS)的肝脏、心脏和血液样本，美国已知的最大规模的SUID死亡心脏组织收集，以及来自美国国立卫生研究院神经生物库(NBB)，研究小岛屿发展中国家的遗传、表观遗传和转录影响。我们将采用一种组学方法，包括下一代测序(外显子组加RNA)，全基因组表观遗传学和代谢组学分析，以确定预测小岛屿发展中国家的新生物标记物。这些发现可能导致诊断测试和早期发现高危婴儿，从而采取预防措施消除小岛屿发展中国家。这项研究也将是第一次成功地使用整合-OMICS方法来解决遗传、表观遗传学和代谢组学对小岛屿发展中国家的贡献。