Flexible Biochip for Highly Parallel Microbial Detection

用于高度并行微生物检测的灵活生物芯片

• 批准号: 6676435
• 负责人: SYED A. HASHSHAM
• 金额: $ 43.62万
• 依托单位: MICHIGAN STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-08-01 至 2006-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6676435
• 关键词: biotechnology; cost effectiveness; environmental engineering; functional /structural genomics; genetic screening; informatics; microarray technology; microorganism classification; nucleic acid sequence; oligonucleotides; technology /technique development; virulence

DESCRIPTION (provided by applicant): We propose to develop a biochip for parallel detection of thousands of microorganisms. It will serve as a genetic screen for the parallel detection, identification, and quantification of up to 10,000 unique microorganisms or gene targets and can be extended to include up to 30,000 targets in the near future. The need for such a comprehensive and broad-range screening tool has been recognized for years in many areas including diagnostics, air, water, food, animal, and plant safety, and bioprocess monitoring. However, its development was hampered by the ability to synthesize and test thousands of possible probes rapidly and economically. This problem is solved now because of the invention of a highly flexible and low-cost in-situ oligonucleotide biochip synthesis platform by the University of Michigan and Xeotron. It can produce biochips overnight without costing a fortune. It is highly flexible with respect to probe content which is software controlled. It uses traditional DNA synthesis chemistry modified to respond to light and thousands of microfluidic reactor array etched on silicon surface. This proposal combines the expertise in bioinformatics, phylogenetics, environmental engineering, and data interpretation for mixed microbial systems available at the Center for Microbial Ecology (CME) at Michigan State University (MSU) with the flexible biochip fabrication technology described above. Probes for the biochip will be designed and validated by researchers at CME, which is a world leader in developing new methodologies to track and identify microbes in complex microbial systems. Synthesis of the biochip will be carried out by UM and Xeotron. Xeotron currently has a $9M phase one venture capital and is fully geared to produce any chip developed on this platform. Ability to detect all microorganisms of interest in a given matrix together will significantly improve the management of health concerns related to microorganisms.

描述（由申请人提供）：我们建议开发一种生物芯片，用于平行检测数千种微生物。它将作为一种遗传筛选，用于平行检测、鉴定和定量多达10，000种独特的微生物或基因靶标，并可在不久的将来扩展到包括多达30，000种靶标。多年来，在许多领域，包括诊断、空气、水、食品、动物和植物安全以及生物过程监测，都认识到需要这样一种全面和广泛的筛查工具。然而，它的发展受到了快速和经济地合成和测试数千种可能的探针的能力的阻碍。这个问题现在得到了解决，因为密歇根大学和Xeotron发明了一种高度灵活和低成本的原位寡核苷酸生物芯片合成平台。它可以在一夜之间生产生物芯片，而不需要花费一大笔钱。它对于软件控制的探头内容具有高度灵活性。它使用传统的DNA合成化学修饰，以响应光和成千上万的微流体反应器阵列蚀刻在硅表面。 该建议将密歇根州立大学（MSU）微生物生态学中心（CME）提供的生物信息学、微生物遗传学、环境工程和混合微生物系统数据解释方面的专业知识与上述灵活的生物芯片制造技术相结合。生物芯片的探针将由CME的研究人员设计和验证，CME是开发跟踪和识别复杂微生物系统中微生物的新方法的世界领导者。生物芯片的合成将由UM和Xeotron进行。Xeotron目前拥有900万美元的第一阶段风险投资，完全可以生产在这个平台上开发的任何芯片。同时检测给定基质中所有相关微生物的能力将显著改善与微生物相关的健康问题的管理。