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Redox-Active and Luminescent Probes for Heme Enzymes

用于血红素酶的氧化还原活性和发光探针

基本信息

批准号：
7277225
负责人：
DAVID B. GOODIN
金额：
$ 28.01万
依托单位：
SCRIPPS RESEARCH INSTITUTE, THE
依托单位国家：
美国
项目类别：
财政年份：
2004
资助国家：
美国
起止时间：
2004-09-01 至 2009-06-04
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7277225
关键词：
Active Sites Address Affect Anisotropy Behavior Binding Binding Sites Biochemical Biological Chemicals Class Copper Coupled Coupling Cytochrome P450 Cytochrome c Peroxidase Detection Development Dioxygen Electrochemistry Electrodes Electron Transport Electrons Elements Energy Transfer Engineering Enzyme Inhibitor Drugs Enzyme Inhibitors Enzymes Feedback Film Fluorescence Goals Gray unit of radiation dose Heme Image Imaging Device Injection of therapeutic agent Kinetics Laboratories Left Ligands Light Link Membrane Proteins Metal Binding Site Metalloproteins Metals Methodology Methods Modeling Molecular Motivation Nature Nitric Oxide Synthase Numbers Oxidases Oxidation-Reduction Pathway interactions Placement Protein Isoforms Proteins Purpose Relative (related person)Ruthenium Scaffolding Protein Screening procedure Series Signal Transduction Site Solutions Spatial Distribution Specificity Structure Surface Testing base cytochrome c oxidase design design and construction electron donor heme a3 in vivo inhibitor/antagonist intracellular protein transport iterative design luminescence novel novel strategies protein localization location research study small molecule tool development

项目摘要

DESCRIPTION (provided by applicant): Integrated efforts of the Gray and Goodin laboratories will focus on a series of designed sensitizer-linked substrates (SLS) to be used as probes of enzyme function, for the discovery of inhibitors, and as imaging agents for biomedically important metalloproteins. Two primary hypotheses drive these studies: 1) rational design of structural elements into a protein is feasible when coupled to a closed design-feedback cycle, and 2) questions about the function of important enzymes may be addressed using such models. The Gray laboratory has pioneered the use of SLS probes, allowing electron transfer (ET) to be directed into deeply buried protein active sites. Results in the Goodin laboratory have shown that proteins may be manipulated by iterative design to create binding sites for small molecules. In this proposal, a combined molecular design approach will be used in which both the protein and the SLS are designed to be self complementary. The proposed electron transfer pathway in cytochrome c peroxidase will be excised and replaced with redox active SLS probes to address questions about the chemical nature and context of specific ET pathways. SLS probes will be coupled to a protein-based model for the heme a3/CUB center of cytochrome c oxidase, providing new ways to test emerging ideas about how electron donors participate in O2 reduction. Novel SLS probes will be developed for identification of enzyme inhibitors and for imaging specific biological targets. One class will be designed to switch from a luminescent to a dark state upon binding to the protein target, and to recover luminescence upon displacement by a competitive inhibitor. The long-term goal is to develop isoform specific probes for screening inhibitors of important enzymes such as cytochrome P450 and nitric oxide synthase (NOS). A second class of probes will be designed to switch from a dark to a luminescent state upon binding to a target. These probes will be designed to detect NOS isoforms; their study will represent a critical first step toward our long-term goal of developing new tools for imaging and spatial localization of proteins in vivo. Overall, this proposal will contribute a completely novel approach to the design of structural elements into protein frameworks for the purpose of detecting, controlling and understanding the behavior of metalloproteins.

描述（由申请人提供）：Gray和Goodin实验室的综合努力将集中在一系列设计的敏化剂连接底物（SLS）上，这些底物将用作酶功能的探针，用于发现抑制剂，并用作生物医学上重要的金属蛋白的成像剂。两个主要的假设驱动这些研究：1）合理设计的结构元件到蛋白质是可行的，当耦合到一个封闭的设计反馈循环，和2）有关的重要酶的功能的问题可以使用这样的模型来解决。格雷实验室率先使用SLS探针，允许电子转移（ET）被引导到深埋的蛋白质活性位点。Goodin实验室的结果表明，蛋白质可以通过迭代设计来操纵，以创建小分子的结合位点。在这个提议中，将使用一种组合的分子设计方法，其中蛋白质和SLS都被设计成自我互补的。细胞色素c过氧化物酶中的电子转移途径将被切除，并替换为氧化还原活性SLS探针，以解决有关特定ET途径的化学性质和背景的问题。SLS探针将耦合到基于蛋白质的模型血红素a3/CUB中心的细胞色素c氧化酶，提供新的方法来测试新兴的想法，电子供体如何参与O2还原。新型SLS探针将被开发用于酶抑制剂的鉴定和特定生物靶标的成像。一类将被设计成在与蛋白质靶结合时从发光状态切换到暗状态，并且在被竞争性抑制剂置换时恢复发光。长期目标是开发亚型特异性探针，用于筛选重要酶如细胞色素P450和一氧化氮合酶（NOS）的抑制剂。第二类探针将被设计成在与靶结合时从黑暗状态切换到发光状态。这些探针将被设计用于检测NOS亚型;他们的研究将代表我们朝着开发体内蛋白质成像和空间定位新工具的长期目标迈出的关键的第一步。总的来说，这一建议将有助于一个全新的方法来设计的结构元素到蛋白质框架的目的，检测，控制和理解金属蛋白的行为。