Protein-DNA Interactions in V(D)J Recombination

V(D)J 重组中的蛋白质-DNA 相互作用

• 批准号: 7169240
• 负责人: Karla K Rodgers
• 金额: $ 24.09万
• 依托单位: UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR
• 依托单位国家: 美国
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-09-15 至 2009-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7169240
• 关键词: Abbreviations; Address; Affinity Chromatography; Ala-Trp-Arg-His-Pro-Gln-Phe-Gly-Gly; Alanine; Amino Acids; Antigen Receptors; Base Pairing; Base Sequence; Binding; Binding Sites; C-terminal; Chromosomal translocation; Class; Code; Communication; Complex; Coupled; DNA; DNA Binding; DNA Binding Domain; DNA Double Strand Break; DNA-Binding Proteins; DNA-Protein Interaction; DNA-protein crosslink; Dependence; Dimerization; Disease; Electrophoretic Mobility Shift Assay; Engineering; Event; Future; GRB10 gene; Gene Combinations; Gene Components; Gene Proteins; Genes; Genetic; Genetic Recombination; Glutathione S-Transferase; Goals; High Mobility Group Proteins; Human; Immune system; Immunoglobulin Variable Region; Immunoglobulins; Immunologic Deficiency Syndromes; Lead; Length; Lymphocyte; Malignant lymphoid neoplasm; Mediating; Modeling; Molecular; Mutagenesis; Mutate; Mutation; N-terminal; Peptide Signal Sequences; Phase; Point Mutation; Process; Protein Binding; Proteins; Reaction; Receptor Gene; Regulation; Resolution; Role; Scanning; Series; Severe Combined Immunodeficiency; Site; Specificity; Spectrum Analysis; Staging; Streptavidin; Structure-Activity Relationship; Synapses; Syndrome; T-Cell Receptor; T-Cell Receptor Genes; T-Lymphocyte; Techniques; Testing; V(D)J Recombination; VDJ Recombinases; Zinc; Zinc Fingers; absorption; antigen binding; antigen processing; base; crosslink; immunoglobulin receptor; macromolecular assembly; maltose-binding protein; novel; protein function; receptor; reconstitution; repaired; research study

V(D)J recombination constructs the variable regions of immunoglobulin and T cell receptor genes in developing lymphocytes through assembly of component gene fragments. The array of possible combinations for gene assembly is the primary basis for sequence diversity of the antigen binding receptor molecules in the immune system. Aberrant recombination reactions, such as those resulting in chromosomal translocations, can lead to lymphoid malignancies. In addition, reduced V(D)J recombination activity, as a result of point mutations in one or the other RAG protein, can lead to immunodeficiency diseases. To understand the molecular basis for these diseases, the factors that catalyze the V(D)J recombination reaction need to be better characterized. The initial site-specific DNA cleavage reaction is catalyzed by the V(D)J recombinase consisting of RAG1 and RAG2, proteins encoded by the recombination-activating genes. Together the RAG proteins bind to a conserved recombination signal sequence (RSS), which borders each gene fragment, and catalyzes double-stranded cleavage between the RSS and the bordering gene fragment in a two-step mechanism. The joining steps, resulting in assembly of the gene fragments, require additional ubiquitous factors including proteins that function in double-stranded DNA break repair. The broad objective of this proposal is to characterize the macromolecular assembly of the RAG proteins with the RSS. In our recent studies, we have identified structural domains of RAG1 that each either interacts with RAG2, the RSS, or the coding gene segments. Based on our results, we have developed a model for participation of the RAG1 DNA-binding domains at each step of the V(D)J recombination reaction. To test our model, we will further characterize the DNA-binding domains in RAG1, and determine their importance at each catalytic step in the recombination reaction. In addition, we will investigate potential regulatory roles for RAG2 in facilitating the association of RAG1 with the RSS. Finally, the requirement for participation of each RAG1 domain in the formation of the catalytically-active complex, as well as in DNA cleavage activity, will be tested. Results from these studies will provide a valuable framework in the determination of the assembly and mechanism of the V(D)J recombinase.

V（D）J重组构建了免疫球蛋白和T细胞受体基因的可变区， 通过组装组成基因片段发育淋巴细胞。可能的数组 基因组装的组合是抗原结合受体序列多样性的主要基础 免疫系统中的分子。异常重组反应，如导致染色体 易位，可导致淋巴恶性肿瘤。此外，降低的V（D）J重组活性，作为 一种或另一种RAG蛋白点突变的结果，可导致免疫缺陷疾病。到 了解这些疾病的分子基础，催化V（D）J重组反应的因素 需要更好地描述。初始位点特异性DNA切割反应由V（D）J催化 重组酶由重组激活基因编码的蛋白质RAG 1和RAG 2组成。 RAG蛋白与保守的重组信号序列（RSS）结合， 基因片段，并催化RSS和邻接基因片段之间的双链切割 两步机制。导致基因片段组装的连接步骤需要额外的 普遍存在的因子，包括在双链DNA断裂修复中起作用的蛋白质。其广泛目标 该建议的主要目的是表征RAG蛋白与RSS的大分子组装。在我们 最近的研究，我们已经确定了RAG1的结构域，每个结构域都与RAG2，RSS， 或编码基因片段。根据我们的研究结果，我们开发了一个模型， 在V（D）J重组反应的每个步骤中的RAG1 DNA结合结构域。为了测试我们的模型，我们将 进一步表征RAG1中的DNA结合结构域，并确定它们在每个催化过程中的重要性。 重组反应中的一步。此外，我们还将研究RAG2在以下方面的潜在调节作用： 促进RAG1与RSS的关联。最后，每个RAG1参与的要求 结构域在催化活性复合物的形成中以及在DNA切割活性中的作用将被 测试.这些研究的结果将提供一个有价值的框架，在确定大会 和V（D）J重组酶的作用机制。

项目成果

Thermal dependency of RAG1 self-association properties.

• DOI: 10.1186/1471-2091-9-5
• 发表时间: 2008-01-30
• 期刊: BMC BIOCHEMISTRY
• 作者: De, Pallabi;Zhao, Shuying;Gwyn, Lori M;Godderz, Leann J;Peak, Mandy M;Rodgers, Karla K
• 通讯作者: Rodgers, Karla K

A non-sequence-specific DNA binding mode of RAG1 is inhibited by RAG2.

• DOI: 10.1016/j.jmb.2009.02.020
• 发表时间: 2009-04-03
• 期刊: Journal of molecular biology
• 影响因子: 5.6
• 作者: Zhao S;Gwyn LM;De P;Rodgers KK
• 通讯作者: Rodgers KK