Biochemical dissection of epigenetic inheritance by Polycomb group proteins

Polycomb 组蛋白对表观遗传的生化剖析

• 批准号: 7678469
• 负责人: Nicole Jane Francis
• 金额: $ 31.24万
• 依托单位: HARVARD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2006
• 资助国家: 美国
• 起止时间: 2006-09-01 至 2011-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7678469
• 关键词: Address; Amino Acid Sequence; Binding; Binding Proteins; Biochemical; Biological Assay; Body Patterning; Cell Cycle; Cell physiology; Cell-Free System; Cells; Chromatin; Chromatin Modeling; Chromatin Structure; Complex; DNA biosynthesis; DNA-Directed DNA Polymerase; Development; Disease; Dissection; Dissociation; Drosophila genus; Epigenetic Process; Event; Gene Expression; Gene Silencing; Gene Targeting; Genes; Genetic Programming; Hematopoietic; Histones; Homeobox Genes; In Vitro; Label; Length; Link; Linker DNA; Maintenance; Malignant Neoplasms; Mammals; Maps; Measures; Mediating; Methylation; Modification; Molecular; Molecular Conformation; Mutation; Nature; Nucleosomes; Oncogenes; Organism; Pattern; Peptide Sequence Determination; Phase; Phenotype; Polycomb; Posterior Sex Combs; Principal Investigator; Process; Protein Binding; Proteins; Public Health; Recruitment Activity; Regulation; Regulator Genes; Repression; Research; Role; Sequence-Specific DNA Binding Protein; Series; Simian virus 40; Stem cells; Testing; Therapeutic; Tumor Suppressor Proteins; X Inactivation; base; cell type; chromatin protein; chromatin remodeling; derepression; in vitro activity; in vivo; interest; metaplastic cell transformation; prevent; programs; protein function; reconstitution; relating to nervous system; research study

DESCRIPTION (provided by applicant): Epigenetic mechanisms make gene expression patterns stable by maintaining gene regulatory information through the cell cycle. In some cases, this is thought to occur through heritable modification of chromatin structure. Proteins encoded by the Drosophila Polycomb Group (PcG) genes maintain key patterns of gene expression during development. These genes and their functions are conserved in mammals where PcG. proteins are also linked to many cancers. To understand how these proteins use chromatin structure to maintain gene silencing and to begin to reconstitute the steps in epigenetic inheritance, in vitro biochemical studies of Polycomb group proteins and chromatin will be carried out. First, detailed studies of a key PcG protein, Posterior Sex Combs (PSC), will be carried out to determine how this protein alters chromatin conformation. Mutations which disrupt in vitro activities of PSC will then be tested for in vivo function. Second, PcG-mediated regulation can be very stable. To test the hypothesis that this stability reflects stable interactions between PcG proteins and chromatin, the off rate of PcG complexes from chromatin will be measured under various conditions in vitro. Finally, a major unsolved mystery is how epigenetic regulators such as PcG proteins maintain gene regulatory information through the disruptive events of the cell cycle. To begin to reconstitute passage of epigenetic information through DNA replication, PcG protein-bound chromatin will be replicated in vitro and the fate of PcG protein-chromatin interactions determined. To connect these biochemical results with in vivo phenomena, the association of PcG proteins with chromatin through S-phase and role of DNA replication in the loss of repression upon depletion of PcG proteins in vivo will be determined. Relevance to public health: Epigenetic mechanisms help maintain cell identities through development by making patterns of gene expression stable. They can also lock aberrant regulatory events, such as those that trigger cellular transformation and cancer, into place. Polycomb proteins are thought to be epigenetic regulators of development and are also upregulated in many cancers. This study aims to understand how these proteins function, which will help understand their role in cancer and may eventually make it possible to target them for therapeutic purposes.

描述（申请人提供）：表观遗传机制通过细胞周期维持基因调控信息，使基因表达模式稳定。在某些情况下，这被认为是通过染色质结构的遗传修饰发生的。由果蝇多梳群（PcG）基因编码的蛋白质在发育过程中维持基因表达的关键模式。这些基因及其功能在哺乳动物中是保守的。蛋白质也与许多癌症有关。为了了解这些蛋白质如何利用染色质结构来维持基因沉默，并开始重建表观遗传的步骤，将进行Polycomb蛋白和染色质的体外生化研究。首先，将详细研究一种关键的PcG蛋白，后性梳状蛋白（PSC），以确定该蛋白如何改变染色质构象。破坏PSC体外活性的突变将在体内测试其功能。其次，pcg介导的调节可以非常稳定。为了验证这种稳定性反映PcG蛋白与染色质之间稳定相互作用的假设，将在体外不同条件下测量PcG复合物与染色质的分离率。最后，一个主要的未解之谜是表观遗传调控因子如PcG蛋白如何通过细胞周期的破坏性事件维持基因调控信息。为了通过DNA复制开始重建表观遗传信息的传递，将在体外复制PcG蛋白结合的染色质，并确定PcG蛋白-染色质相互作用的命运。为了将这些生化结果与体内现象联系起来，将确定PcG蛋白通过s期与染色质的关联以及DNA复制在体内PcG蛋白耗尽后抑制丧失中的作用。与公众健康相关：表观遗传机制通过使基因表达模式稳定来帮助维持细胞特性。它们还可以锁定异常的调控事件，比如触发细胞转化和癌症的事件。多梳蛋白被认为是发育的表观遗传调控因子，在许多癌症中也被上调。这项研究旨在了解这些蛋白质的功能，这将有助于了解它们在癌症中的作用，并可能最终使它们成为治疗目的的目标。