GWAS of Venous Thrombosis

静脉血栓形成的 GWAS

• 批准号: 7689874
• 负责人: John A. Heit
• 金额: $ 56.66万
• 依托单位: MAYO CLINIC ROCHESTER
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-09-20 至 2012-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7689874
• 关键词: Acute; African American; Age; Anticoagulants; Arts; Candidate Disease Gene; Catheters; Centers for Disease Control and Prevention (U.S.); Clinic; Clinical; Cohort Studies; Complex; County; DNA; Data; Databases; Diagnosis; Disease; Disease susceptibility; Environment; Environmental Exposure; Environmental Risk Factor; Etiology; Event; Factor V Leiden mutation; Family; Frequencies; Funding; Gender; Genes; Genetic; Genetic Predisposition to Disease; Genotype; Goals; Hemostatic function; Heritability; Image; Incidence; Individual; Inflammation; Investigation; Link; Malignant Neoplasms; Methods; Mutation; Myocardial Infarction; National Human Genome Research Institute; Natural Immunity; Office for Human Research Protections; Parents; Pathway Analysis; Pathway interactions; Patients; Physicians; Population; Predisposition; Prevention Research; Prophylactic treatment; Recruitment Activity; Recurrence; Reporting; Research; Research Design; Research Personnel; Risk; Risk Factors; Sample Size; Sampling; Siblings; Single Nucleotide Polymorphism; Single Nucleotide Polymorphism in Coding Sequence; Specific qualifier value; Stroke; Sudden Death; Susceptibility Gene; Testing; Thromboembolism; Thrombosis; Upper arm; Venous; Venous Thrombosis; Work; base; biobank; case control; cohort; experience; gene environment interaction; gene interaction; genetic variant; genome wide association study; improved; instrument; novel; population based; prevent; proband; programs; residence; sex

DESCRIPTION (provided by applicant): Our overall long-term goal is to determine the etiology of the common and complex (multifactorial) disease, venous thromboembolism (VTE), by focusing on genetic and environmental factors that increase the risk of VTE, and the interactions among these factors. VTE is a common disease with over 900,000 incident or recurrent events in the U.S. annually; of these, almost one-third are fatal. To improve survival and avoid complications, VTE must be prevented. However, previous efforts to prevent VTE have been stymied because most individuals with known environmental (clinical) risk factors for VTE do not develop VTE. We hypothesize that, among those exposed to a clinical risk factor(s), a genetic predisposition distinguishes those who do from those who do not develop VTE. In support of this hypothesis, we have shown that VTE segregates in families due to heritability. VTE follows a complex mode of inheritance involving polygenes and environmental exposure. Our specific aims are: (1) to perform a genome wide association (GWA) screen and analysis using the 1M SNP platform specified by NHGRI genotyping facilities; (2) to test a)whether environmental exposures modify the observed relationship between genotype and VTE (geneenvironment interaction); and b) whether gene-gene interactions influence susceptibility to VTE; and 3) to test whether SNPs associated with VTE are located within or adjacent to genes that are functionally linked using pathway analysis. We currently have stored DNA samples from 829 VTE cases and 478 controls that are available for sharing with NHGRI, and by July 1, 2008, we project that we will have DNA samples from 1300 cases and 1300 controls. For all cases and controls, data on environmental exposures that are independent risk factors for VTE were collected with a standardized instrument. These data are stored in a SAS database by unique patient study number identifier and can be easily and rapidly shared. Using state of the art statistical genetic methods, we will identify genetic variants associated with VTE, including interactions. We will make the resulting data rapidly and widely available for research use and work collaboratively to share experience and expertise across participating biorepositories. Our results will have potentially great clinical utility by allowing physicians to stratify patients exposed to clinical risk factors into high- and low-VTE risk, identify unexposed patients at risk, and better target prophylaxis.

描述（由申请人提供）： 我们的总体长期目标是通过关注增加静脉血栓栓塞症（VTE）风险的遗传和环境因素以及这些因素之间的相互作用来确定常见和复杂（多因素）疾病的病因。静脉血栓栓塞是一种常见疾病，在美国每年有超过90万起事件或复发事件;其中近三分之一是致命的。为了提高生存率和避免并发症，必须预防VTE。然而，以前的努力，以防止静脉血栓栓塞已受阻，因为大多数人与已知的环境（临床）风险因素静脉血栓栓塞不会发展静脉血栓栓塞。我们假设，在那些暴露于临床风险因素的人群中，遗传易感性将那些暴露于临床风险因素的人群与那些不发生VTE的人群区分开来。为了支持这一假设，我们已经表明，由于遗传性，静脉血栓栓塞症在家庭中隔离。VTE遵循复杂的遗传模式，涉及多基因和环境暴露。我们的具体目标是：（1）使用NHGRI基因分型机构指定的1 M SNP平台进行全基因组关联（GWA）筛选和分析;（2）测试a）环境暴露是否改变了基因型和VTE之间的观察关系（基因-环境相互作用）;和B）基因-基因相互作用是否影响对VTE的易感性;和3）使用途径分析来测试与VTE相关的SNP是否位于功能性连锁的基因内或附近。我们目前已经储存了来自829例VTE病例和478例对照的DNA样本，可与NHGRI共享，到2008年7月1日，我们预计将有来自1300例病例和1300例对照的DNA样本。对于所有病例和对照组，使用标准化仪器收集作为VTE独立风险因素的环境暴露数据。这些数据通过唯一的患者研究编号标识符存储在SAS数据库中，并且可以轻松快速地共享。使用最先进的统计遗传学方法，我们将确定与VTE相关的遗传变异，包括相互作用。我们将迅速和广泛地提供所产生的数据用于研究，并协同工作，在参与的生物储存库中分享经验和专业知识。我们的研究结果将有潜在的巨大的临床效用，使医生分层患者暴露于临床危险因素为高和低VTE风险，确定未暴露的患者的风险，更好的目标预防。

项目成果

Replication of genome wide association studies of alcohol dependence: support for association with variation in ADH1C.

• DOI: 10.1371/journal.pone.0058798
• 发表时间: 2013
• 期刊: PloS one
• 影响因子: 3.7
• 作者: Biernacka JM;Geske JR;Schneekloth TD;Frye MA;Cunningham JM;Choi DS;Tapp CL;Lewis BR;Drews MS;L Pietrzak T;Colby CL;Hall-Flavin DK;Loukianova LL;Heit JA;Mrazek DA;Karpyak VM
• 通讯作者: Karpyak VM