Gene conversion and end processing mechanisms during double-strand break repair

双链断裂修复过程中的基因转换和末端加工机制

• 批准号: 7596925
• 负责人: Jeannine LaRocque Kappas
• 金额: $ 4.72万
• 依托单位: SLOAN-KETTERING INST CAN RESEARCH
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-04-01 至 2011-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7596925
• 关键词: ATP Hydrolysis; Address; Affect; Animal Model; Cell Line; Cell physiology; Cells; Chromosomes; DNA; DNA Damage; DNA Double Strand Break; DNA Repair; DNA analysis; Disease; Double Strand Break Repair; Environmental Risk Factor; Event; Gene Conversion; Genetic; Genomic Instability; Genomics; Goals; Heteroduplex DNA; Kinetics; Lead; Lesion; Mammalian Cell; Mammals; Maps; Measures; Mismatch Repair; Mitotic; Modeling; Molecular; Monitor; Mouse Cell Line; Mus; Mutagenesis; Mutation; Pathway interactions; Process; Proteins; Relative (related person); Reporting; Research; Research Personnel; Site; System; Techniques; Testing; Work; Yeasts; cell type; embryonic stem cell; homologous recombination; human disease; in vivo; interest; mutant; novel; recombinational repair; repaired; tool; tumorigenesis

DESCRIPTION (provided by applicant): My broad research goal is to investigate how cells respond to DNA damage. Accurate and efficient repair is necessary to maintain genomic integrity; loss of this integrity can lead to mutagenesis, human disease, and tumorigenesis. In particular, I am interested in studying the mechanisms of homologous recombination (HR) repair of a particularly deleterious lesion, the DNA double-strand break (DSB). Numerous studies in a variety of model organisms have contributed to the current understanding of HR repair. However, many outstanding questions preclude us from completely understanding the mechanisms of HR and how DNA ends at the site of the DSB are processed in mammalian systems. A two-fold approach will be taken to address these both of these questions. First, using genetic approaches, the mechanisms of gene conversion associated with HR repair of DSBs will be investigated. It is necessary to expand on the gene conversion studies previously reported in this lab and others. A novel repair substrate will allow to more finely map gene conversion tracks. Additionally, analyzing repair events in a mismatch repair defective mutant will uncover heteroduplex DNA (hDNA) that would have otherwise been repaired. This genetic background can be used as a tool to test the following persistent questions regarding mechanisms of gene conversion: one-ended vs. two-ended strand invasion, fate of donor sequence, and hDNA vs. gap repair associated with long gene conversion tracts. Second, a physical analysis of how DNA ends are processed at the site of a DSB and how HR products are formed in mammalian cells will be completed. This analysis will include determining the kinetics of DSB formation, measure rates of DNA degradation at the DSB site, analyze of localization of proteins to the DSB that are required for repair, and lastly, when and how HR repair products are formed. Together, these studies will elucidate the mechanisms of gene conversion, the contribution of the canonical DSBR model and SDSA in the formation of mitotic gene conversion repair products, and clarify the mechanism of end processing of a DSB. The ability for a cell to respond to DNA damage is necessary to maintain genomic integrity. A particularly toxic lesion, DSBs, can arise from environmental factors as well as during normal cellular processes. As evident in the numerous diseases, genome instability, tumorigenesis, and mutagenesis associated with inefficient or inaccurate repair of DSBs, it is integral to understand the mechanisms required in repairing these deleterious lesions.

描述（由申请人提供）：我的广泛研究目标是研究细胞如何应对DNA损伤。准确和有效的修复是保持基因组完整性所必需的;这种完整性的丧失可导致诱变、人类疾病和肿瘤发生。特别是，我有兴趣研究同源重组（HR）修复一个特别有害的病变，DNA双链断裂（DSB）的机制。对各种模式生物的大量研究有助于目前对HR修复的理解。然而，许多悬而未决的问题使我们无法完全理解HR的机制以及在哺乳动物系统中DSB位点处的DNA末端是如何加工的。将采取双管齐下的办法来解决这两个问题。首先，使用遗传学方法，与DSB的HR修复相关的基因转换机制将被研究。有必要扩展本实验室和其他实验室先前报道的基因转换研究。一种新的修复底物将允许更精细地绘制基因转换轨迹。此外，分析错配修复缺陷突变体中的修复事件将揭示原本会被修复的异源双链DNA（hDNA）。这种遗传背景可以用作测试以下关于基因转换机制的持续问题的工具：单端与双端链侵入，供体序列的命运，以及与长基因转换片段相关的hDNA与缺口修复。其次，将完成对DNA末端如何在DSB位点加工以及HR产物如何在哺乳动物细胞中形成的物理分析。该分析将包括确定DSB形成的动力学，测量DSB位点处的DNA降解速率，分析修复所需的蛋白质在DSB上的定位，以及最后，何时以及如何形成HR修复产物。总之，这些研究将阐明基因转换的机制，典型的DSBR模型和SDSA在有丝分裂基因转换修复产物的形成中的贡献，并阐明DSB末端加工的机制。 细胞对DNA损伤做出反应的能力是维持基因组完整性所必需的。一种特别有毒的病变，DSB，可以由环境因素以及在正常的细胞过程中产生。如在与DSB的低效或不准确修复相关的许多疾病、基因组不稳定性、肿瘤发生和诱变中显而易见的，理解修复这些有害损伤所需的机制是不可或缺的。