MONKEY CORTICAL CONNECTIONS DATABASE

猴子皮质连接数据库

• 批准号: 7959080
• 负责人: Edward G Jones
• 金额: $ 3.56万
• 依托单位: UNIVERSITY OF CALIFORNIA AT DAVIS
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-05-01 至 2010-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7959080
• 关键词: Adult; Architecture; Archives; Area; Atlases; Back; Brain; Brain imaging; California; Cerebral cortex; Cerebrum; Clinical Data; Cognition; Computer Retrieval of Information on Scientific Projects Database; Data; Data Set; Databases; Disabled Persons; Disease; Esthesia; Functional disorder; Funding; Grant; Image; Individual; Institution; Knowledge; Life; Macaca mulatta; Microscopic; Monkeys; Names; Neurologic; Neurosciences; Perception; Primates; Publications; Research; Research Personnel; Resolution; Resources; Retrieval; Series; Slide; Source; Staining method; Stains; Structure; Tracer; United States National Institutes of Health; Visual; base; digital; handicapping condition; high standard; image warping; interoperability; neuropsychiatry; research study

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Knowledge of cerebral cortical connectivity in primates is essential for understanding higher brain mechanisms of sensation, perception and cognition and their disorders but connection tracing studies are increasingly uncommon, older studies are accessible only through publications which represent an earlier investigator's interpretation of the data, and access to the original data for re-interpretation is commonly unavailable. Retrieval of archives of experimental material and conversion to an accessible digital form presents considerable logistical and other handicaps. We seek to develop a comprehensive and ongoing archive of material demonstrating cortical and subcortical connectivity in rhesus monkey brains, in which all the histological material from individual experiments is available in its digital form, with a suitable search engine providing open access to all investigators. In this way, original experimental data can be annotated and re-interpreted as newer parcellations of cortical and subcortical structures are made on the basis of accumulating functional and clinical data. The current proposal builds on expertise in constructing high resolution microscopic atlases of primate brain architecture and will create a searchable database of connections of the cerebral cortex in the adult rhesus monkey. A pipeline will be established in which targeted cortical areas in a series of monkeys will be injected with a tracer transported both retrogradely and anterogradely. Digital data about each individual brain will be collected by means of: structural mri; serial imaging of the sectioned blockface as each 40¿m section is removed during sectioning of the brain; imaging at high resolution of alternate sections through the brain stained for the transported tracer or stained with the nissl stain; warping images of the sections back onto the blockface images of the brain and mris to provide a 3d volumetric dataset for each brain. The searchable database into which the individual datasets will be stored will incorporate a capacity to annotate the dataset from each experimental brain in relation to a standard high resolution digital atlas of the rhesus monkey brain, a capacity for making queries about connections by name or by visual inspection of injected regions or of likely sources of afferents and targets of efferents, a capacity for interoperability with databases of other relevant neuroscience information. The database will also permit incorporation of datasets of connectivity drawn from material in publications and/or existing slide. The result will be a living archive to which data essential for the understanding of the pathophysiology of neurological and neuropsychiatric disorders can continue to be added and queried.

这个子项目是许多研究子项目中利用 资源由NIH/NCRR资助的中心拨款提供。子项目和 调查员(PI)可能从NIH的另一个来源获得了主要资金， 并因此可以在其他清晰的条目中表示。列出的机构是 该中心不一定是调查人员的机构。 灵长类动物大脑皮质连接的知识对于理解感觉、知觉和认知的高级大脑机制及其障碍至关重要，但联系追踪研究越来越罕见，较早的研究只能通过代表早期研究人员对数据的解释的出版物获得，而且通常无法获得原始数据以进行重新解释。检索实验材料档案和将其转换为可访问的数字形式，在后勤和其他方面都存在相当大的障碍。我们寻求开发一个全面且持续的材料档案，展示恒河猴大脑中皮质和皮质下的连接，其中来自个别实验的所有组织学材料都以数字形式提供，并有一个合适的搜索引擎向所有研究人员开放访问。通过这种方式，原始实验数据可以在积累的功能和临床数据的基础上，随着皮质和皮质下结构的新部分的产生而被注释和重新解释。目前的建议建立在构建灵长类大脑结构的高分辨率显微地图集方面的专业知识，并将创建一个可搜索的成年恒河猴大脑皮质连接的数据库。将建立一条管道，向一系列猴子的目标皮质区域注射逆行和顺行运输的示踪剂。有关每个单独大脑的数字数据将通过以下方式收集：结构磁共振成像；在对大脑进行切片期间移除每个40？m切片时的切片块面的连续成像；为运输的示踪剂或尼塞尔染色而对交替切片进行的高分辨率成像；将切片图像扭曲回到大脑的块面图像和磁共振成像，以提供每个大脑的三维体积数据集。将在其中存储单个数据集的可搜索数据库将包括与猕猴大脑的标准高分辨率数字地图集相关的注释来自每个实验大脑的数据集的能力、按名称或通过肉眼检查注射区域或可能的传入来源和传出目标来查询连接的能力、与其他相关神经科学信息的数据库互操作的能力。该数据库还将允许纳入从出版物和(或)现有幻灯片材料中提取的连接性数据集。结果将是一个活生生的档案，对理解神经和神经精神障碍的病理生理学至关重要的数据可以继续添加和查询。