Bridging Sustainable Distribution of TRBD Bioinformatics Resources

桥接 TRBD 生物信息学资源的可持续分配

• 批准号: 8367299
• 负责人: Wenzhong Xiao
• 金额: $ 57.94万
• 依托单位: MASSACHUSETTS GENERAL HOSPITAL
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-09-01 至 2015-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8367299
• 关键词: Address; Algorithms; Archives; Area; Award; Bioinformatics; Biological; Biomedical Research; Blood Cells; Burn Trauma; Burn injury; Cell Separation; Clinical; Clinical Data; Clinical Medicine; Clinical Research; Collaborations; Communities; Complex; Computer software; Custom; Data; Data Quality; Data Set; Data Sources; Databases; Documentation; Environment; Fatty acid glycerol esters; Feedback; Financial Support; Funding; Funding Agency; Funding Opportunities; Future; Gene Chips; Genes; Genomics; Glues; Grant; Histocompatibility Testing; Hour; Human; Imagery; Immune response; Industry; Inflammation; Inflammatory Response; Information Systems; Injury; Internet; Intervention; Knowledge; Leukocytes; Methodology; Microfluidics; Modeling; Multiple Organ Failure; National Institute of General Medical Sciences; Nonprofit Organizations; Outcome; Pathway Analysis; Pathway interactions; Patients; Physiological; Population; Process; Production; Proteomics; Recovery; Regulatory Element; Relative (related person); Reporting; Research; Research Infrastructure; Research Personnel; Resources; Role; Sampling; Science; Security; Skeletal Muscle; Skin; Solutions; Staging; System; T-Lymphocyte; Time; Tissues; Trauma; Update; Vertebral column; Work; Writing; cell type; comparative; computerized data processing; cost; experience; improved; injured; monocyte; neutrophil; new technology; novel; programs; response; response to injury; tool; usability; user-friendly; web interface

"Inflammation and the Host Response to Injury" is one of the Large-Scale Collaborative Project Awards of the National Institute of General Medical Sciences (NIGMS). Commonly known as the Glue Grants program, the stated purpose of these awards was "to enable the solution of major problems in biomedical research and to facilitate the next evolutionary stage of integrative biomedical science". Our Glue Grant investigators agreed that the most important biological problem to tackle in the area of injury research centered on the innate inflammatory response, and specifically, to improve our systems level understanding of the key regulatory elements, and their relative roles and importance that drive the host's response to serious injury and its accompanying severe systemic inflammation. The problem could only be addressed by first acquiring large amounts of new data in a discovery-driven approach. The start-up costs associated with our introduction of high throughput genomics in clinical medicine in terms of time, effort, and money have been substantial. An important strategy for our investigators is to sustain the infrastructure, resources, tools, and methodologies developed in this Glue Grant through funding collaborations with other federal funding agencies, industry, and/or other nonprofit organizations. Funding opportunity PAR-10-261 allows us to seek financial support to preserve the availability of our unique datasets as resources "not yet self-sustaining" and to improve the usability of the visualization tools we have created to store, organize, archive, analyze, and visualize the data generated by our program. There are three specific aims that define the activities for maintaining and enhancing our existing bioinformatics databases and tools. (1) Optimize the TRDB information system deployed and in production during the Glue Grant program. (2) Enhance the user-friendly web interface environment by improving the linkage between databases, models, algorithms, and visualization tools. (3) Optimize the display of the heterogeneous datasets, to allow the first-of-its-kind comparative analyses between differing injury types, cell/tissue types, time point sampling, and time course.

“炎症和宿主对损伤的反应”是美国国立普通医学科学研究所（NIGMS）的大型合作项目奖之一。这些奖项通常被称为“胶水资助计划”，其明确目的是“解决生物医学研究中的重大问题，并促进综合生物医学科学的下一个发展阶段”。我们的胶水资助研究人员一致认为，损伤研究领域要解决的最重要的生物学问题集中在先天炎症反应，特别是提高我们对关键调控元件的系统水平理解，以及它们在驱动宿主对严重损伤及其伴随的严重全身炎症反应方面的相对作用和重要性。这个问题只能通过首先以发现驱动的方法获取大量新数据来解决。与我们在临床医学中引入高通量基因组学相关的启动成本（时间、精力和金钱）是巨大的。我们的研究人员的一个重要策略是通过与其他联邦资助机构、行业和/或其他非营利组织的资助合作来维持本次“胶水资助”中开发的基础设施、资源、工具和方法。资助机会 PAR-10-261 使我们能够寻求财务支持，以保留我们独特的数据集作为“尚未自我维持”的资源的可用性，并提高我们拥有的可视化工具的可用性 创建用于存储、组织、存档、分析和可视化我们的程序生成的数据。三个具体目标定义了维护和增强我们现有生物信息学数据库和工具的活动。 （1）优化Glue Grant计划期间部署和生产的TRDB信息系统。 （2）通过改进数据库、模型、算法和可视化工具之间的链接，增强用户友好的Web界面环境。 （3）优化异质数据集的显示，首次实现不同损伤类型、细胞/组织类型、时间点采样和时间过程之间的比较分析。