Generating a formal set of collaborative standards for sharing behavioral data and task designs to enable reproducibility in neuroscience
Generating a formal set of collaborative standards for sharing behavioral data and task designs to enable reproducibility in neuroscience
批准号:
9795228
负责人:
Stephen Anthony Edwards
金额:
$28.87万
依托单位国家:
美国
项目类别:
财政年份:
2019
资助国家:
美国
项目状态:
已结题
起止时间:
2019-08-02 至 2019-12-31
关键词:
AddressAdoptionArchivesBRAIN initiativeBehaviorBehavioralBrainCodeCognitionCommunitiesComplexComputer softwareCustomDataEcosystemEducational workshopEnsureEventFeedbackFutureGoalsHuman bodyLaboratoriesLanguageLogicMeasurementMeasuresMotorNeurosciencesOnline SystemsPerceptionPositioning AttributeProgramming LanguagesPublicationsPublishingReadingReproducibilityResearch PersonnelScienceSensorySoftware EngineeringSoftware ToolsStandardizationStimulusSystemTechniquesTechnologyTextTimeTo specifyWorkWritingbehavioral studycomputer sciencedata archivedata formatdata modelingdata sharingdesignexperienceexperimental studyflexibilityhackathonimprovedinnovationmultimodalityopen sourceoutreachprototyperelating to nervous systemresponsesoftware developmentsoftware systemssuccesssymposiumtechnological innovationtool
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英文摘要
Abstract
The goal of this project is to develop an archival data format and a formal task specification
language to serve as standards for describing behavioral experiments. Because different
laboratories use different behavioral systems, hardware, and software, it has been difficult to
communicate behavioral task design, share data, or reproduce experiments. To fill this gap, we
have assembled a team that includes neuroscientists with extensive behavioral experience, a
computer science expert in real-time formal language design, and scientific software engineers.
To meet the needs of the broader community, we have formed a large consortium of
laboratories, including BRAIN-initiative grantees that have supplied numerous use cases
spanning the range of behavioral tasks.
In Aim 1, we will identify requirements for behavioral data formats by convening a large
consortium of experimentalists. To represent behavioral data, we will create an extension to the
NWB:N format to facilitate analysis alongside other behavior types. To specify behavioral
contingencies, we will develop a formal BEhAvioral task Description Language (BEADL) using
the latest computer science techniques for real-time language design.
In Aim 2, we will develop an open-source software suite for editing, executing and visualizing
behavioral tasks. The software will interpret the same behavior into machine code for hardware
controllers, or publication figures for humans. To ensure the standards address the needs of the
community, we will collaborate with users and consortium labs to implement an extensive
battery of published tasks.
In Aim 3, we will expand our outreach to broaden adoption of behavioral task description and
data formats. We will engage the broader community through web-based tutorials, hackathons,
and workshops at major conferences, and will encourage feedback. A publication-ready,
graphical BEADL format will be developed to generate summary figures for behavioral tasks
that are formal, yet easy to understand.
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Generating a formal set of collaborative standards for sharing behavioral data and task designs to enable reproducibility in neuroscience
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批准号:10185656
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项目类别:
-
资助金额:$194.38万
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财政年份:2019
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负责人:Stephen Anthony Edwards
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依托单位:
海外基金