Structures, Dynamics, and Functions of Membrane Proteins

膜蛋白的结构、动力学和功能

• 批准号: 9276178
• 负责人: STANLEY J OPELLA
• 金额: $ 43.78万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN DIEGO
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-05-01 至 2022-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9276178
• 关键词: Bacterial Proteins; Biochemical; Biology; Carrier Proteins; Crystallization; Detergents; Disease; Drug Metabolic Detoxication; Drug Targeting; Electron Microscopy; Environment; G-Protein-Coupled Receptors; Goals; HIV-1; Hepatitis C; Human Genome; Hydrophobicity; Immobilization; Medicine; Membrane; Membrane Proteins; Mercury; Methods; Molecular; Molecular Biology; Molecular Conformation; Mutation; Phospholipids; Physiological; Protein Dynamics; Proteins; Research; Sampling; Structure; System; Technology; Temperature; X-Ray Crystallography; base; chemokine receptor; cost; cryogenics; hydrophilicity; innovation; method development; protein protein interaction; protein structure

7. Project Summary Membrane proteins are important targets for structure determination. One quarter of the proteins in the human genome are membrane proteins, and the majority of drug targets are membrane proteins. However, both structure determination and dynamics characterization of membrane proteins have lagged because of technological difficulties resulting largely from the phospholipid environment in which the proteins reside; it is highly asymmetric with hydrophobic and hydrophilic components, and it immobilizes the proteins. Consequently, our overarching goal is to develop new and more powerful methods for determining the structures of membrane proteins. This is an essential first step in revealing the bases of their functions. Although considerable progress has been made using solution NMR, X-ray crystallography, and electron microscopy, this has been at the potential cost of distorting the structures through the use of detergent environments and cryogenic temperatures for the protein samples. None of the proteins that we are studying have been crystallized. Thus, the technology gap that we seek to fill is well defined. Innovative features of the research plan include its scientific breadth, which ranges from molecular biology to structure calculations. Several smaller membrane proteins will be used for methods development, including Vpu from HIV-1, p7 from HCV, and mercury transport proteins from the bacterial mercury detoxifications system. They serve the dual purposes of posing interesting biochemical functional questions and serving as tractable systems for developing methods of determining the structures and describing the dynamics of larger membrane proteins, such as our principal target of G-protein coupled receptors (GPCRs). At the conclusion of the research plan, we expect to be able to describe the functions of chemokine receptors. These studies will involve the structures and dynamics of the monomeric proteins, protein-protein interactions, and conformational changes in the proteins. NMR is unique in its ability to characterize global and local dynamics of proteins. Thus, the findings will be highly complementary to parallel studied by x-ray crystallography and electron microscopy. Moreover, NMR is capable of describing structure, dynamics, and interactions of the proteins in their phospholipid bilayer environment under physiological conditions.

7.项目摘要 膜蛋白是结构测定的重要靶标。人体内四分之一的蛋白质 基因组是膜蛋白，并且大多数药物靶标是膜蛋白。但无论 膜蛋白的结构测定和动力学表征已经滞后， 技术上的困难主要来自于蛋白质所处的磷脂环境; 具有疏水性和亲水性组分的高度不对称性，并且其固定蛋白质。 因此，我们的首要目标是开发新的和更强大的方法来确定 膜蛋白的结构。这是揭示其功能基础的重要的第一步。 虽然已经取得了相当大的进展，使用溶液核磁共振，X射线晶体学，电子 显微镜，这是在扭曲的结构，通过使用洗涤剂的潜在成本 蛋白质样品的环境和低温温度。我们研究的蛋白质 已经结晶化了因此，我们寻求填补的技术差距是明确的。 该研究计划的创新特点包括其科学广度，从分子生物学到 结构计算。几种较小的膜蛋白将用于方法开发，包括 来自HIV-1的Vpu、来自HCV的p7和来自细菌汞解毒作用的汞转运蛋白 系统它们具有双重目的，即提出有趣的生物化学功能问题， 用于开发确定结构和描述较大结构的动态的方法的易处理的系统 膜蛋白，如我们的G蛋白偶联受体（GPCR）的主要目标。 在研究计划结束时，我们希望能够描述趋化因子受体的功能。 这些研究将涉及单体蛋白质的结构和动力学，蛋白质-蛋白质相互作用， 以及蛋白质的构象变化。核磁共振是独特的能力，其特点是全球和地方 蛋白质动力学因此，研究结果将是高度互补的平行研究的x射线 晶体学和电子显微镜。此外，NMR能够描述结构、动力学和物理性质。 生理条件下蛋白质在其磷脂双层环境中的相互作用。