Tailoring virulence of dengue virus in mammals and mosquitoes

调整登革热病毒对哺乳动物和蚊子的毒力

• 批准号: 9252366
• 负责人: Eckard Wimmer
• 金额: $ 45.63万
• 依托单位: STATE UNIVERSITY NEW YORK STONY BROOK
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-04-15 至 2019-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9252366
• 关键词: Aedes; Algorithms; Animals; Applications Grants; Arboviruses; Arthropods; Attenuated; Biohazardous Substance; Biological Assay; Biology; Caribbean region; Cell Culture Techniques; Cell Line; Cells; Cessation of life; Codon Nucleotides; Computers; Culicidae; Dengue; Dengue Infection; Dengue Vaccine; Dengue Virus; Development; Disadvantaged; Disease; Doctor of Medicine; E protein; Environment; Funding; Future; Gene Expression; Genome; Goals; Grant; Human; Immune; Immunocompromised Host; Infection; Infection prevention; Insecta; Kinetics; Laboratories; Laboratory Study; Lead; Macaca; Macaca mulatta; Mammalian Cell; Mammals; Medical; Microbiology; Molecular Biology; Molecular Genetics; Monkeys; Mus; Pathogenesis; Phenotype; Primates; Proteins; Puerto Rico; RNA Stability; Recommendation; Research; Research Personnel; Risk; Science; Serotyping; Temperature; Testing; Time; United States National Institutes of Health; Universities; Vaccines; Variant; Viral Genome; Viral Proteins; Virulence; Virus; Work; Writing; attenuation; base; biological systems; computer design; computer science; design; experimental study; global health; human disease; immunogenicity; interest; multidisciplinary; protein E; public health relevance; ribosome profiling; suckling; tissue/cell culture; vaccine candidate; vaccine development; vector; virology; virus genetics; virus pathogenesis; yeast genetics

DESCRIPTION (provided by applicant): We plan to explore changes of the specific sequence space of genomes of arboviruses that have evolved to replicate efficiently in cells of two taxa (mammals and insects) at two different temperatures (27 and 37 C) and with a delicately balanced codon pair bias (CPB) accommodating CPB differences in mammals and insects. We have chosen for our studies dengue virus (DENV) that is the leading cause of arthropod-borne human diseases in the world. This is a truly multidisciplinary project that brings together investigators from a leading laboratory studying dengue virus pathogenesis and molecular biology (Berkeley, CA), from an Arbovirus Laboratory (Albany, NY) studying the biology of insect borne viruses, from a Department of Computer Sciences (University of Miami) specializing in encodings of biological system, and from a Department of Molecular Genetics and Microbiology (Stony Brook University, NY) known for work on plus stranded viruses. With the aid of computers and specifically tailored algorithms we will recode the genome of DENV such that it will contain large segments (encoding either the proteins E, NS3, or NS5) of codon pairs dis-favored in mammals but normal in insects. We predict that these genomes will encounter severe restrictions of replication in mammalian cells, but will replicate in insects cells with wild type kinetics. To avoid the possibility that the recoded viruses could be a biohazard for the environment (via Ae. aegypti, their natural vectors), the recoded viruses will be tested in mosquitoes for replication phenotypes. The recoded DENV genomes, in turn, will also be tested for their virulence and attenuation in experimental animals (mice and monkeys). Since the basic strategy allows us tailoring the virulence of the agent by specifically down-regulating the expression of virus- encoded proteins, our project offers a variety of possibilities to study replication phenotypes of DENV tissue culture cells and experimental animals. At the same time it may yield candidate strains that may be suitable for further development as vaccines. Vaccine development, however, is not the primary goal pursued in this application.

描述(申请人提供)：我们计划探索虫媒病毒基因组的特定序列空间的变化，这些虫媒病毒已经进化为在两个不同的温度(27和37摄氏度)下在两个分类群(哺乳动物和昆虫)的细胞中高效复制，并具有微妙平衡的密码子对偏差(CPB)，以适应哺乳动物和昆虫的CPB差异。我们选择登革病毒(DENV)进行研究，它是世界上节肢动物传播人类疾病的主要原因。这是一个真正的多学科项目，汇集了研究登革热病毒发病机制和分子生物学的领先实验室(加利福尼亚州伯克利)、虫媒病毒实验室(纽约州奥尔巴尼)、计算机科学系(迈阿密大学)专门研究生物系统编码的计算机科学系以及以研究正链病毒而闻名的分子遗传学和微生物系(纽约州石溪大学)的研究人员。在计算机和专门定制的算法的帮助下，我们将重新编码DENV的基因组，使其包含在哺乳动物中不受欢迎但在昆虫中正常的大段密码子对(编码蛋白质E、NS3或NS5)。我们预测，这些基因组将在哺乳动物细胞中遇到严格的复制限制，但将在昆虫细胞中以野生型动力学进行复制。以避免重新编码的病毒可能对环境造成生物危害(通过Ae.埃及伊蚊，它们的天然媒介)，重新编码的病毒将在蚊子中测试复制表型。重新编码的DENV基因组也将在实验动物(小鼠和猴子)身上测试它们的毒力和减毒效果。由于基本策略允许我们通过特别下调病毒编码蛋白的表达来定制该制剂的毒力，因此我们的项目为研究DENV组织培养细胞和实验动物的复制表型提供了各种可能性。同时，它可能会产生适合作为疫苗进一步开发的候选菌株。然而，疫苗开发并不是这项申请的主要目标。