FTIR STUDY OF SIGNAL TRANSDUCTION IN SENSORY RHODOPSINS

感觉视紫红质信号转导的 FTIR 研究

• 批准号: 7342112
• 负责人: KENNETH J ROTHSCHILD
• 金额: $ 22.97万
• 依托单位: BOSTON UNIVERSITY (CHARLES RIVER CAMPUS)
• 依托单位国家: 美国
• 财政年份: 2005
• 资助国家: 美国
• 起止时间: 2005-02-01 至 2009-09-29
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7342112
• 关键词: Active Biological Transport; Amino Acids; Anabaena; Animals; Archaea; Bacteriorhodopsins; Biological Models; Chimeric Proteins; Class; Communication; Complex; Crystallography; Cyanobacterium; Data; Eubacterium; Eukaryota; Eukaryotic Cell; Event; Family; Feasibility Studies; G-Protein-Coupled Receptors; GTP-Binding Proteins; Genetic Techniques; Goals; Halobacterium salinarium; Helix (Snails); Integral Membrane Protein; Isotope Labeling; Laboratories; Light; Mediating; Membrane; Membrane Proteins; Methods; Microbial Rhodopsins; Microscopic; Modeling; Molecular; Natronobacterium; Neurospora crassa; Peptides; Phosphorylation; Proteins; Protons; Raman Spectrum Analysis; Research; Resolution; Retinal; Retinal Pigments; Rhodopsin; Roentgen Rays; Schiff Bases; Sensory; Sensory Rhodopsins; Series; Signal Transduction; Signal Transduction Pathway; Site; Site-Directed Mutagenesis; Spectroscopy, Fourier Transform Infrared; Spectrum Analysis; Structural Models; Structure; Techniques; Testing; Time; Transducers; Vertebral column; Water; Work; absorption; base; chromophore; deprotonation; ear helix; experience; fungus; in vivo; mutant; protonation; receptor; research study; sensory rhodopsin I; transmission process

The primary objective of this project is to understand the signaling mechanism of light activated sensory rhodopsins (SRs), part of the growing family of 7-helix transmembrane microbial rhodopsins. The focus of this research will be on two key microbial rhodopsins, sensory rhodopsins I (SRI) and sensory rhodopsin II (SRII). In contrast to bacteriorhodopsin (BR), the well-studied light-driven proton pump, these SRs function by transmitting a signal to an associated transducer protein, analogous to the well-known G- proteins in the rhodopsin signaling cascade. Detailed knowledge at the molecular level of the signaling mechanisms of SRs would be of great significance for understanding a variety of membrane protein-based cellular processes as well as have applications in the field of biotechnology and biomedicine. In the case of SRII from Natronobacterium pharaonis, the high-resolution structure of the receptor linked to the transmembrane part of its cognate HtrII transducer has revealed important molecular details of the proteinprotein interactions, including the contact residues and internal water molecules located in the interface region. However, so far X- ray diffraction has not revealed the molecular events connecting the initial light-induced isomerization of the retinal chromophore to the activation of the transducer, possibly due to structural constraints imposed by the crystal lattice. In the case of SRII, which mediates a two-color repellent and attractant response, even less information is known due to difficulties of crystallization and expression. In addition, our own and other studies demonstrate the importance of studying SRs under physiological conditions in native membranes. Ideally, new techniques are needed for studying SR structural changes in a native environment, including even the inside the cell. In the revised project we will continue to use an array of advanced IR-based techniques, some of which have recently been developed in our laboratory, to examine the detailed molecular events which lead to signal activation in SRs. Significant progress has been made in the past grant period leading to new molecular details and tentative models of SR function. In the proposed research, these models will be tested in detail by measuring structural changes of specific residues, internal water molecules, and the peptide backbone in SR receptor-transducer complexes on a time-scale of sub-picoseconds to seconds. A unique aspect of the proposed studies is the ability, for the first time, to study these structural changes in intact functioning cells where direct correlation with other events, such as phototaxis and photoinduced charge movements, can be measured. The proposed studies will also benefit from our development of new methods to: i) measure sub-picosecond structural changes in the protein and its internal water molecules using advanced ultrafast time-resolved IR spectroscopy and ii) rapidly express and isotope label SRs and their transducer complexes using the technology of cell-free expressed nanolipoparticles (NLPs). This work will be facilitated by close collaborations with the laboratories of Dr. J. Spudich at the University of Texas Medical Center, Houston, whose laboratory has contributed much of our current knowledge about SRs, and Dr. M. Coleman at the Lawrence Livermore National Laboratories, whose group has developed cell-free techniques to express membrane proteins in NLPs. Specific objectives of this project are:

这个项目的主要目标是了解光的信号机制 激活的感觉视紫红质（SR），7-螺旋跨膜蛋白家族的一部分， 微生物视紫红质这项研究的重点将是两个关键的微生物视紫红质， 感觉视紫红质I（SRI）和感觉视紫红质II（SRII）。相比 细菌视紫红质（BR），研究充分的光驱动质子泵，这些SR的功能， 将信号传递到相关的转导蛋白，类似于众所周知的G- 视紫红质信号级联中的蛋白质。分子水平上的详细知识 SR的信号机制对于理解 各种基于膜蛋白的细胞过程，以及在 生物技术和生物医学领域。 在来自法老盐碱杆菌的SRII的情况下， 与其同源的HtrII转换器的跨膜部分连接的受体已经揭示了 蛋白质相互作用的重要分子细节，包括接触 残留物和内部水分子位于界面区域。然而，到目前为止，X- 射线衍射没有揭示连接初始光诱导的分子事件， 视网膜发色团的异构化对转换器的激活，可能是由于 晶体晶格所施加的结构约束。就SRII而言， 介导双色驱避剂和引诱剂的反应，甚至更少的信息是已知的 由于结晶和表达的困难。此外，我们自己和其他研究 证明了在自然条件下研究SR的重要性 膜。理想情况下，需要新的技术来研究SR结构的变化， 自然环境，甚至包括细胞内部。 在修订后的项目中，我们将继续使用一系列先进的红外技术， 其中一些是最近在我们的实验室开发的， 导致SR中信号激活的分子事件。了重大进展 导致新的分子细节和SR的初步模型 功能在拟议的研究中，这些模型将通过测量 特定残基、内部水分子和肽的结构变化 在亚皮秒的时间尺度上， 秒拟议研究的一个独特方面是，第一次， 这些完整功能细胞中的结构变化与其他细胞直接相关， 可以测量诸如趋光性和光致电荷移动的事件。的 拟议的研究也将受益于我们开发的新方法，以：i）测量 蛋白质及其内部水分子的亚皮秒结构变化， 先进的超快时间分辨红外光谱和ii）快速表达和同位素标记 利用无细胞表达技术， 纳米脂质颗粒（NLP）。 这项工作将通过与J. 休斯顿德克萨斯大学医学中心的Spudich，他的实验室 贡献了我们目前关于SR的知识，M。科尔曼在 劳伦斯利弗莫尔国家实验室，其小组已经开发出无细胞 在NLP中表达膜蛋白的技术。该项目的具体目标是：