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Laser Scanning Imaging System in Support of Single-Molecule Studies of Genome Integrity

支持基因组完整性单分子研究的激光扫描成像系统

基本信息

批准号：
10793020
负责人：
Eric C Greene
金额：
$ 14.79万
依托单位：
COLUMBIA UNIVERSITY HEALTH SCIENCES
依托单位国家：
美国
项目类别：
财政年份：
2016
资助国家：
美国
起止时间：
2016-05-01 至 2026-04-30
项目状态：
未结题

项目摘要

PROJECT SUMMARY Our chromosomes are constantly bombarded with a variety of insults, resulting in damage that must be repaired. Cells have evolved mechanisms to detect and repair broken strands of DNA, thereby preventing loss of important genetic information. Double-stranded DNA breaks (DSBs) are a type of damage that lead to particularly disastrous outcomes. If not corrected, DSBs can cause gross chromosomal rearrangements, which are the hallmark of all forms of cancer. Homologous recombination (HR) is a conserved pathway that cells can use to repair DSBs, and HR is necessary to prevent and repair the damage that arises during DNA replication. When a DSB occurs, the DNA ends are processed to generate 3’ single-strand DNA (ssDNA) overhangs. The ssDNA ends then pair with homologous sequence elsewhere in the genome, and the missing DNA is replaced using the homologous DNA as a template for replication. Finally, the replicated intermediate is resolved, regenerating the continuity of the broken DNA. HR requires the coordinated action of a complex repertoire of proteins, which are responsible for sensing damage, recruiting essential factors, and processing and repairing the damaged DNA. The consequences of disrupting HR are devastating. For example, mutations in the RAD51 recombinase are embryonic lethal in mice, and mutations in human RAD51 are linked to breast cancers. In addition, defects in BRCA2 account for at least 5% of all breast cancers and also confer a genetic predisposition to ovarian cancer. BRCA2 is thought to help regulate HR, and loss of this regulation may be the reason why this gene is linked to hereditary cancers. New discoveries will be necessary to fully understand the mechanistic basis for these outcomes. Our research program is focused on understanding how proteins sense and respond to damaged DNA and they then repair the damaged DNA to prevent mutations that can lead to cancer. To help address these problems we have developed unique technologies that allow us to directly visualize hundreds of individual molecules using optical microscopy, which enables us to monitor the spatial and temporal progression of DNA repair and DNA replication in real-time at the single-molecule level. Using this approach, we seek to define the fundamental mechanisms that our cells use to replicate and repair DNA, with the long-term goal of understanding how errors during these processes can lead to chromosomal rearrangements.

项目摘要我们的染色体不断受到各种各样的侮辱，造成必须修复的损害。细胞已经进化出检测和修复DNA断裂链的机制，从而防止重要的DNA链丢失。遗传信息。双链DNA断裂（DSB）是一种损伤，灾难性的后果。如果不纠正，DSB可导致严重的染色体重排，这是所有癌症的标志同源重组（homopolymerase recombination，HR）是细胞修复DSB的一条保守途径防止和修复DNA复制过程中出现的损伤。当发生DSB时，DNA末端加工以产生3'单链DNA（ssDNA）突出端。ssDNA末端然后与同源的基因组中其他地方的序列，并使用同源DNA作为模板替换缺失的DNA 用于复制。最后，复制的中间体被分解，再生出断裂DNA的连续性。HR 需要一系列复杂的蛋白质的协调作用，这些蛋白质负责感知损伤，募集必需因子，加工修复受损的DNA。破坏的后果 HR是毁灭性的。例如，RAD 51重组酶中的突变在小鼠中是胚胎致死的，并且人RAD51的突变与乳腺癌有关。此外，BRCA2的缺陷至少占5% 在所有乳腺癌中，也赋予卵巢癌的遗传易感性。BRCA2被认为有助于调节HR，这种调节的丧失可能是该基因与遗传性癌症相关的原因。新要充分理解这些结果的机制基础，就必须有新的发现。我们的研究项目专注于了解蛋白质如何感知和响应受损的DNA，然后修复受损的DNA以防止可能导致癌症的突变。为了解决这些问题，我们已经开发出独特的技术，使我们能够直接可视化数百个单独的分子，光学显微镜，这使我们能够监测DNA修复和DNA的空间和时间进程在单分子水平上实时复制。使用这种方法，我们试图定义基本的我们的细胞用来复制和修复DNA的机制，长期目标是了解错误是如何发生的。会导致染色体重排。