APPLICATION OF PTMAP2 FOR PROTEIN POSTTRANSLATIONAL MODIFICATION ANALYSIS

PTMAP2 在蛋白质翻译后修饰分析中的应用

• 批准号: 8364316
• 负责人: YINGMING ZHAO
• 金额: $ 0.1万
• 依托单位: CARNEGIE-MELLON UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-09-15 至 2013-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8364316
• 关键词: Biomedical Research; Cell physiology; Data Files; Escherichia coli Proteins; Funding; Grant; High Performance Computing; Mass Spectrum Analysis; National Center for Research Resources; Organism; Play; Post-Translational Protein Processing; Principal Investigator; Protein Databases; Proteins; Research; Research Infrastructure; Resources; Role; Source; Testing; United States National Institutes of Health; cost; genome-wide; protein function; tool

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. Primary support for the subproject and the subproject's principal investigator may have been provided by other sources, including other NIH sources. The Total Cost listed for the subproject likely represents the estimated amount of Center infrastructure utilized by the subproject, not direct funding provided by the NCRR grant to the subproject or subproject staff. Posttranslational modifications (PTMs) play essential roles in protein function and cellular physiology. Unrestrictive identification of all types of PTMs using mass spectrometry is a powerful approach. Previous efforts have allowed us to successfully develop PTMap v2.0, a tool for genome-wide characterization of protein posttranslational modifications. Initial tests demonstrate that PTMap2 is capable to identify all types of PTMs in E. coli protein database from a single mass spectrometry data file. Here we propose to extend the application of PTMap2 tool to identify unknown PTMs in diverse cellular organisms.

这个子项目是利用资源的许多研究子项目之一。 由NIH/NCRR资助的中心拨款提供。对子项目的主要支持 子项目的首席调查员可能是由其他来源提供的， 包括美国国立卫生研究院的其他来源。为子项目列出的总成本可能 表示该子项目使用的中心基础设施的估计数量， 不是由NCRR赠款提供给次级项目或次级项目工作人员的直接资金。 翻译后修饰(PTM)在蛋白质功能和细胞生理中起着至关重要的作用。利用质谱学对所有类型的PTMS进行无限制的鉴定是一种强有力的方法。之前的努力使我们成功地开发了PTMap v2.0，这是一种用于蛋白质翻译后修饰的全基因组表征的工具。初步测试表明，PTMap2能够从单一的质谱学数据文件中识别大肠杆菌蛋白质数据库中的所有类型的PTM。在这里，我们建议扩大PTMap2工具的应用范围，以识别不同细胞生物中的未知PTM。