New Tools for Experimental Phasing of Twinned Diffraction Data
New Tools for Experimental Phasing of Twinned Diffraction Data
批准号:
10022493
负责人:
Petrus H Zwart
金额:
$30.14万
依托单位国家:
美国
项目类别:
财政年份:
2019
资助国家:
美国
项目状态:
已结题
起止时间:
2019-09-23 至 2023-08-31
关键词:
AchievementAddressAdoptedAlgorithmsAwarenessBayesian MethodBindingBiochemical ProcessCharacteristicsCommunitiesComplementComputer softwareCrystallizationCrystallographyDataData CollectionDetectionDimensionsGoalsHybridsInequalityInfrastructureIntuitionLikelihood FunctionsLinkMainstreamingMapsMedicalMethodsModelingModernizationModificationMolecularNaturePathologyPhasePreparationProteinsResearch PersonnelRouteSamplingShapesSiteSpecific qualifier valueStructural ModelsStructureTechniquesTwin Multiple BirthWorkbasecomputer frameworkdata spacedensityimprovedinsightmacromoleculenovel therapeuticsrestraintstructural biologysuccesstheoriestool
中文摘要
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英文摘要
Summary
Crystallography is an indispensable tool in modern structural biology, allowing for precise
determination of molecular interactions in proteins. The majority of the computational
crystallographic tools available have been developed on the prerequisite that the diffraction data
is free from pathologies such as twinning. For the detection of twinned data and refinement of
structures, excellent software is already available, but for more upstream tasks, no general‐
purpose tools are available. The absence of tools that allow handling of twinned data has resulted
in practical difficulties when solving structures from such data. This proposal addresses this
critical gap by developing twinning‐aware tools and algorithms for all mainstream
crystallographic tasks for which no such tools exist. We propose to adopt and extend existing
density modification and heavy atom determination methods such that they are suited for
handling twinned data. The proposed algorithm propagates vital prior information from real
space all the way into data space, numerically stabilizing an otherwise ill‐conditioned detwinning
step using a regularization approach. To provide the community with a full complement of tools
for de novo phasing, heavy atom refinement and phasing strategies will be addressed by
developing and evaluating numerical techniques needed for the twinned‐SAD likelihood
function. This problem will be addressed using an adaptive quadrature approach.
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会议论文
The Development of Computational Methods for Fluctuation Xray Scattering
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批准号:9016562
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项目类别:
-
资助金额:$34.62万
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财政年份:2014
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负责人:Petrus H Zwart
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依托单位:
The Development of Computational Methods for Fluctuation Xray Scattering
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批准号:9222022
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项目类别:
-
资助金额:$34.62万
-
财政年份:2014
-
负责人:Petrus H Zwart
-
依托单位:
The Development of Computational Methods for Fluctuation Xray Scattering
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批准号:8857207
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项目类别:
-
资助金额:$34.62万
-
财政年份:2014
-
负责人:Petrus H Zwart
-
依托单位:
海外基金