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Investigating chromatin-based mechanisms of astrocyte pathology during inflammation response and stress-induced behaviors

Investigating chromatin-based mechanisms of astrocyte pathology during inflammation response and stress-induced behaviors
研究炎症反应和应激诱导行为期间基于染色质的星形胶质细胞病理学机制
批准号:
10246177
负责人:
Sasha Fulton
金额:
$1.0万
依托单位国家:
美国
项目类别:
财政年份:
2020
资助国家:
美国
项目状态:
已结题
起止时间:
2020-08-14 至 2021-08-23
关键词:
ATAC-seqAffectAffectiveAffinity ChromatographyAnhedoniaAnimalsAnxietyAstrocytesAutomobile DrivingAutopsyBacteriaBehaviorBehavioralBindingBinding SitesBiological AssayBrain regionCell NucleusCell physiologyCellsChIP-seqChromatinChromatin Remodeling FactorChronicClinicalComplexControl AnimalCoupledCultured CellsDNA-Binding ProteinsDataData SetDecision MakingDiseaseEpigenetic ProcessFellowshipFemaleFluorescenceFunctional disorderGene ExpressionGene TargetingGenesGeneticGenetic TranscriptionGenomic SegmentGoalsHumanInflammationInflammatoryInflammatory ResponseInvestigationLaboratoriesLaboratory ResearchLentivirus VectorMajor Depressive DisorderMeasuresMediatingMental disordersMentorshipMessenger RNAMethodsMolecularMorphologyMusNF-kappa BNeurogliaNeuronsNuclearPathogenicityPathologicPathologyPathway interactionsPhenotypePopulationPredispositionProcessProteinsRegulationRegulatory ElementResearch PersonnelRewardsRibosomesRodent ModelRoleSalineSignal TransductionSorting - Cell MovementStressSucroseSymptomsSystemTechniquesTestingTherapeuticTherapeutic AgentsTissuesTrainingTranscriptional RegulationTranslatingTransposaseUp-RegulationViral Vectorbasebehavioral phenotypingcareercell cortexcell typecellular transductionchromatin remodelingepigenetic regulationexperimental studygenetic regulatory proteingenome-wideinsightknock-downmalemolecular phenotypemouse modelneuroinflammationneurotransmissionnoveloverexpressionpre-clinicalpreferenceresponsesocialsocial defeatsocial stresstargeted treatmenttranscription factortranscriptome sequencingvector

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英文摘要
Although MDD has been predominantly studied in the context of neuronal function, emerging evidence indicates that dysregulation of glia may be equally important – particularly during chronic neuroinflammation in response to stress, which is known to contribute to the pathophysiology of MDD. However, the cell-type specific transcriptional dynamics driving these processes remain unclear because traditional epigenetic chromatin accessibility profiling methods are not compatible with cell-type specific approaches. Our laboratory has recently implemented the newly developed technique FANS (Fluorescence-Activated Nuclear Sorting)-coupled ATAC- seq (Assay for Transposase-Accessible Chromatin-Sequencing) to profile the cell type-specific regulatory landscape in human MDD in orbitofrontal cortex (OFC), a brain region that processes reward-based decision- making and may mediate anhedonic symptoms in MDD. Interestingly, we only detected MDD-specific open chromatin regions (OCRs) in the glial, but not the neuronal OFC cell population. Gene set analyses of MDD- specific OCRs showed significant enrichment of astrocyte-specific genes regulating NF-KB inflammation response. Using motif discovery, I identified ZBTB7A, a chromatin remodeling protein with recognition sequences significantly overrepresented in MDD-specific OCRs. Recently, ZBTB7A has been shown to orchestrate chromatin accessibility for a distinct subset of delayed induction NF-Kb target genes, suggesting that ZBTB7A may regulate the transduction of chronic NF-Kb stress signals from adaptive to pathological. My pilot data has shown that ZBTB7A is upregulated in the OFC of both human MDD and in OFC astrocytes of a preclinical chronic social defeat stress (CSDS) mouse model, as well as in cultured murine primary astrocytes treated with LPS (a compound which induces NF-KB and inflammation). Given these preliminary data, I hypothesize that upregulation of ZBTB7A in OFC astrocytes acts as a pathogenic driver of pro- inflammatory NF-Kb activation in MDD through modulation of chromatin accessibility at key downstream target genes, leading to MDD-related behavioral deficits. In Aim 1, I will characterize the basic mechanisms of manipulating this chromatin remodeler at baseline and during inflammation stress by manipulating ZBTB7A levels in a cultured human primary astrocyte system, then treating with LPS or saline followed by assessment of astrocyte reactivity (IHC), chromatin accessibility (via ATAC-seq), epigenetic regulation (ChIP-seq) and gene expression (RNA-seq). In Aim 2, I will explore the therapeutic potential of targeting Zbtb7a by using novel astrocyte-specific viral vectors to determine if Zbtb7a is necessary and sufficient in the OFC to affect vulnerability to inflammation stress-induced behavioral deficits in a preclinical mouse model of social defeat stress. Together these experiments will offer enormous potential for new mechanistic insights into disease pathology in the context of a relatively understudied cell-type, astrocytes, in neuroinflammation and stress.
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Characterizing effects of OFC astrocyte plasticity in inflammation response and stress vulnerability with single-cell resolution
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