Virulence gene regulators of enteric bacterial pathogens: Determining the structural and functional mechanisms of small molecule and polypeptide inhibitors

肠道细菌病原体的毒力基因调节因子：确定小分子和多肽抑制剂的结构和功能机制

• 批准号: 10586700
• 负责人: Fredrick Jon Kull
• 金额: $ 62.54万
• 依托单位: DARTMOUTH COLLEGE
• 依托单位国家: 美国
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-11-17 至 2027-10-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10586700
• 关键词: Acinetobacter; Address; Arabinose; Artificial Intelligence; Belief; Binding; Biochemistry; Biological Models; Categories; Characteristics; Citrobacter rodentium; Collaborations; DNA; DNA Binding; DNA Binding Domain; Dimerization; Enteral; Environment; Escherichia; Family; Family member; Family suidae; Fatty Acids; Gene Expression; Gene Expression Regulation; Genetic Transcription; Genetic study; Goals; Homologous Gene; Human; Klebsiella; Knowledge; Legionella; Ligand Binding; Ligand Binding Domain; Ligands; Machine Learning; Mediating; Metabolism; Microbiology; Molecular; Molecular Conformation; Morbidity - disease rate; Pathogenesis; Pathogenicity; Positioning Attribute; Protein Family; Proteins; Pseudomonas; Publishing; Regulator Genes; Regulon; Research; Resolution; Role; Salmonella; Salmonella enterica; Shigella; Signal Transduction; Specificity; Structure; Testing; Therapeutic; Vibrio; Vibrio cholerae; Virulence; Work; Yersinia; alpha helix; biological adaptation to stress; combat; dimer; enteric pathogen; enteroaggregative Escherichia coli; enterotoxigenic Escherichia coli; human morbidity; human mortality; inhibitor; innovation; long chain fatty acid; member; mortality; multidisciplinary; novel; pathogen; pathogenic bacteria; polypeptide; protein function; response; small molecule; structural biology; trait; transcription factor; virulence gene

Virulence gene regulators of enteric bacterial pathogens: Determining the structural and functional mechanisms of small molecule and polypeptide inhibitors Summary: The AraC/XylS family is one of the largest families of bacterial transcription factors with ~16K members distributed amongst 81% of sequenced bacterial species. Family members are present in pathogenic genera including Acinetobacter, Escherichia, Klebsiella, Legionella, Pseudomonas, Salmonella, Shigella, Vibrio, and Yersinia. The regulon of any given family member typically encompasses one of three categories: metabolism, stress response, or pathogenesis. Those involved in metabolism or stress response often have well characterized ligands. For example, AraC regulates the expression of genes involved in arabinose metabolism and its activity is modulated by arabinose. In contrast, small molecule ligands have not been identified for the vast majority of virulence regulators within the AraC family (hereafter referred to as AraC-VRs), which has led to the commonly held belief that the AraC-VR branch of the family has lost the ability to respond to ligands. Published work by us and others –and our preliminary studies– suggest that this assumption is incorrect. Additionally, a large family of endogenously encoded polypeptides, ANRs for AraC negative regulators, have been discovered that inhibit AraC-VRs though an unknown mechanism. The long-term goal of this project is to define the structural and molecular mechanisms underlying virulence gene regulation. The specific objectives of this proposal are to determine how AraC family members including Rns, a primary virulence regulator in enterotoxigenic E. coli (ETEC), are inhibited by 1) small molecule fatty acids and 2) AraC negative regulators (ANRs). Our central hypothesis is that Rns must dimerize in order to bind to DNA and regulate transcription and that these inhibitors block this by distinct mechanisms. The motivating rationale for these studies is that they will identify the molecular and structural requirements for inhibiting virulence gene expression, and will be tested by three specific aims: 1) Determine the structural mechanism by which ligand binding and dimerization regulates Rns activity; 2) Test our hypothesis that the Rns homolog RegA is regulated in the same manner; 3) Determine the mechanism by which ANRs inhibit Rns activity, and clarify if this is distinct from the inhibitory mechanism of small molecule fatty acids. This project is innovative in that the basic molecular mechanisms by which these proteins are regulated are not understood. Our multidisciplinary team, with expertise in microbiology, biochemistry, and structural biology, is uniquely positioned to undertake the proposed studies to determine these mechanisms. This research is significant, not only because it will answer outstanding questions of how AraC proteins function in enteric pathogens, but because we expect to demonstrate that AraC family proteins from a wide variety of enteric pathogens share a common mechanism of being inhibited by fatty acids. This will open up new possibilities for therapeutic strategies to combat global mortality and morbidity.

肠道细菌病原体毒力基因调控因子的结构和功能测定 小分子和多肽抑制剂的作用机制 总结： AraC/XylS家族是细菌转录因子中最大的家族之一，成员约为16 K 分布在81%的测序细菌物种中。家族成员存在于致病性属中 包括不动杆菌属、埃希氏菌属、克雷伯氏菌属、军团菌属、假单胞菌属、沙门氏菌属、志贺氏菌属、弧菌属和 耶尔森氏菌任何给定家族成员的调节子通常包括三类之一：代谢， 应激反应或发病机制。那些参与新陈代谢或压力反应的人通常有很好的 特征配体。例如，AraC调节参与阿拉伯糖代谢的基因的表达 其活性受阿拉伯糖调节。相比之下，尚未鉴定出小分子配体用于本发明。 AraC家族中的绝大多数毒力调节因子（以下称为AraC-VR）， 普遍认为该家族的AraC-VR分支已经失去了对配体的反应能力。 我们和其他人发表的工作-以及我们的初步研究-表明这种假设是不正确的。 此外，内源性编码多肽的大家族，AraC负调节因子的ANR， 已经发现通过未知的机制抑制AraC-VR。 这个项目的长期目标是确定毒力的结构和分子机制 基因调控该提案的具体目标是确定ARAC家族成员，包括 Rns是肠致病性大肠杆菌的主要毒力调节因子。大肠杆菌（ETEC），被1）小分子脂肪酸 酸和2）AraC负调节剂（ANRs）。我们的中心假设是Rns必须二聚化，以便 结合DNA并调节转录，这些抑制剂通过不同的机制阻断转录。的 这些研究的动机是，它们将确定分子和结构要求， 抑制毒力基因表达，并将通过三个具体目标进行测试：1）确定结构 配体结合和二聚化调节Rns活性的机制; 2）检验我们的假设，即 Rns同源物RegA以相同的方式调节; 3）确定ANR抑制Rns的机制 活性，并澄清这是否与小分子脂肪酸的抑制机制不同。 这个项目是创新的，因为这些蛋白质被调节的基本分子机制不是 明白我们的多学科团队拥有微生物学、生物化学和结构生物学方面的专业知识， 在进行拟议的研究以确定这些机制方面具有独特的地位。本研究是 重要的是，不仅因为它将回答AraC蛋白如何在肠道中发挥作用的悬而未决的问题， 病原体，但因为我们希望证明，AraC家族蛋白质从各种肠道 病原体具有被脂肪酸抑制的共同机制。这将开辟新的可能性， 降低全球死亡率和发病率的治疗战略。