Human Genetics of Tuberculosis
结核病的人类遗传学
基本信息
- 批准号:10621305
- 负责人:
- 金额:$ 44.6万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2021
- 资助国家:美国
- 起止时间:2021-07-01 至 2026-04-30
- 项目状态:未结题
- 来源:
- 关键词:AccountingAffectAfricanAllelesAlveolar MacrophagesBiochemicalCandidate Disease GeneCell LineCellsClinicalCodeCollaborationsCollectionComplementary DNAComputer AnalysisComputing MethodologiesCytometryDataDatabasesDevelopmentDiseaseDrynessEast AsianEpidemiologyEthnic OriginEtiologyEuropeanExposure toFamilyFibroblastsGenesGeneticGenetic HeterogeneityGenetic PolymorphismGenetic Predisposition to DiseaseGenetic studyGenotypeHLA-DRB1HaitiHaitianHealthHereditary DiseaseHumanHuman GeneticsImmune responseImmunityImmunologic Deficiency SyndromesImmunologicsImmunophenotypingImpairmentIn VitroIndividualInfectionInterferon Type IIInterleukin-12InvestigationKnowledgeLeukocytesLoss of HeterozygosityMacrophageMinorityMinority GroupsModelingMolecularMycobacterium tuberculosisPathogenesisPathway interactionsPatient RecruitmentsPatientsPenetrancePharmacologyPopulationPopulation HeterogeneityPredispositionPreventivePrimary InfectionProbabilityProductionProteinsProxyRecurrenceRelapseReportingRiskRoleSamplingSiblingsTNF geneTYK2TechniquesTechnologyTestingTherapeuticTuberculosisVariantautosomecandidate identificationcausal variantcell typeexome sequencingexperimental studygenetic epidemiologygenetic variantgenome sequencinggenome wide association studygenome-widehigh dimensionalityimmunopathologyinduced pluripotent stem cellinterleukin-23kindredloss of functionmouse modelnext generation sequencingnovelpathogenreactivation from latencyrecruitresponsesecondary infectionsoftware developmentstemtranscriptome sequencingwhole genome
项目摘要
Project Summary
Tuberculosis (TB) caused by Mycobacterium tuberculosis (Mtb) is a major health problem. About a quarter of
the world population is infected, yet only a minority develop TB, either during primary infection, or later during
secondary infection or reactivation of latent Mtb. Genetic epidemiological evidence strongly suggests that TB is
driven by human genetic predisposition. Its molecular basis has been dissected since 2000. We discovered 2
types of inborn errors of immunity (IEI) underlying TB, both impairing interferon (IFN)-γ immunity: (i) rare IEI,
such as autosomal recessive complete IL-12Rβ1 and TYK2 deficiencies, found in a few TB patients, and (ii) a
common IEI due to homozygosity for the TYK2 missense P1104A variant that selectively disrupts IL-23-
dependent IFN-γ immunity, accounting for up to 1% of European TB cases. These findings provided proof of
principle that there are both rare and common monogenic etiologies of human TB, in specific ethnicities, and
established that TYK2-dependent IFN-γ production is essential for protective immunity to Mtb. However, the vast
majority of TB patients lack a genetic etiology. We hypothesize that TB is the consequence of a diverse collection
of monogenic or digenic IEI, with incomplete or more rarely complete penetrance, and in a sizeable proportion
of populations of diverse ancestries. To discover these variants, our project will combine a candidate gene
approach focused on rare and common coding TYK2 variants with a genome-wide search for rare and common
variants in other genes. TB patients will be recruited in Haiti with a specific focus on patients belonging to families
with at least two TB-affected siblings, and/or with recurrent forms of TB, as these patients are more likely to carry
IEI. Our project will also take advantage of our previously recruited TB patients in Haiti and worldwide (>1,500),
following a strategy combining: (i) a comprehensive genetic study based on next generation sequencing (>900
samples with whole exome sequencing data already available) to search for candidate TB-causing variants using
cutting-edge computational analyses under different genetic hypotheses (genetic heterogeneity or homogeneity,
monogenic or digenic inheritance), and (ii) in-depth functional studies to biochemically characterize the proteins
encoded by the newly discovered candidate variants, and to validate their causal role immunologically at the
molecular and cellular levels. We will also test whether the effects of these IEI may be influenced by Mtb strains
using a specific host-pathogen interaction study in Haitian patients. Our preliminary data indicate that this
approach is fruitful, as we already identified strong candidate genotypes, including both bi-allelic loss-of-function
rare variations in TYK2, TNF, BTN2A2, and PDCD1, and mono- or bi-allelic common variations in IL10RA and
HLA-DRB1. Our search for rare and common variants underlying monogenic or digenic IEI that govern the
development of TB with high penetrance will decipher mechanisms of protective immunity to Mtb in humans.
This approach will also pave the way to new preventive or therapeutic approaches, aiming to rescue genetically
deficient immune responses in patients at risk of, or with TB.
项目总结
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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Jean-Laurent Casanova其他文献
Jean-Laurent Casanova的其他文献
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{{ truncateString('Jean-Laurent Casanova', 18)}}的其他基金
Inborn errors of immunity in patients with life-threatening COVID-19
危及生命的 COVID-19 患者先天性免疫缺陷
- 批准号:
10655372 - 财政年份:2021
- 资助金额:
$ 44.6万 - 项目类别:
Inborn errors of immunity in patients with life-threatening COVID-19
危及生命的 COVID-19 患者先天性免疫缺陷
- 批准号:
10278180 - 财政年份:2021
- 资助金额:
$ 44.6万 - 项目类别:
Inborn errors of immunity in patients with life-threatening COVID-19
危及生命的 COVID-19 患者先天性免疫缺陷
- 批准号:
10449276 - 财政年份:2021
- 资助金额:
$ 44.6万 - 项目类别:
Molecular and cellular basis of epidermodysplasia verruciformis
疣状表皮发育不良的分子和细胞基础
- 批准号:
10561607 - 财政年份:2020
- 资助金额:
$ 44.6万 - 项目类别:
Monogenic basis of resistance to SARS-CoV2 and predisposition to severe COVID-19
抗 SARS-CoV2 的单基因基础和严重 COVID-19 的易感性
- 批准号:
10159675 - 财政年份:2020
- 资助金额:
$ 44.6万 - 项目类别:
Molecular and cellular basis of epidermodysplasia verruciformis
疣状表皮发育不良的分子和细胞基础
- 批准号:
10352425 - 财政年份:2020
- 资助金额:
$ 44.6万 - 项目类别:
Molecular and cellular basis of epidermodysplasia verruciformis
疣状表皮发育不良的分子和细胞基础
- 批准号:
9887337 - 财政年份:2020
- 资助金额:
$ 44.6万 - 项目类别:
Inherited IRF9 deficiency: a novel genetic etiology of severe influenza
遗传性 IRF9 缺陷:严重流感的新遗传病因
- 批准号:
9510816 - 财政年份:2018
- 资助金额:
$ 44.6万 - 项目类别:
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