Defining the molecular interactions required for flavivirus genome packaging and virus assembly

定义黄病毒基因组包装和病毒组装所需的分子相互作用

• 批准号: 10750591
• 负责人: Joyce Jose
• 金额: $ 38.59万
• 依托单位: PENNSYLVANIA STATE UNIVERSITY, THE
• 依托单位国家: 美国
• 财政年份: 2023
• 资助国家: 美国
• 起止时间: 2023-08-10 至 2028-07-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10750591
• 关键词: Address; Affect; Affinity; Affinity Chromatography; Amino Acids; Antiviral Agents; Arboviruses; Architecture; Binding; Biological Assay; Candidate Disease Gene; Capsid; Capsid Proteins; Cell Line; Cells; Cellular Membrane; Cellular Structures; Clustered Regularly Interspaced Short Palindromic Repeats; Communicable Diseases; Complex; Congenital Abnormality; Coupled; Data; Dengue; Dengue Virus; Disease; Encephalitis; Endoplasmic Reticulum; Experimental Designs; Fetus; Flavivirus; Flavivirus Infections; Gene Proteins; Genes; Genome; Genomics; Golgi Apparatus; Guide RNA; Human; Image; Imaging Techniques; Infection Control; Integration Host Factors; Intervention; Kinetics; Knowledge; Label; Libraries; Licensing; Mango - dietary; Mass Spectrum Analysis; Maternal-Fetal Exchange; Mediating; Membrane; Methodology; Microcephaly; Microtubules; Mission; Modeling; Modification; Molecular Virology; Mothers; National Institute of Allergy and Infectious Disease; Nonstructural Protein; Nuclear; Nuclear Structure; Organelles; Pathway interactions; Peptide Hydrolases; Persons; Powassan virus; Process; Production; Proteins; Protocols documentation; Public Health; RNA; RNA Binding; RNA replication; RNA-Protein Interaction; Replication-Associated Process; Reporting; Role; Site; Small Interfering RNA; Structural Protein; Structure; Testing; Therapeutic Intervention; Transmission Electron Microscopy; Vaccines; Vector-transmitted infectious disease; Vesicle; Viral; Viral Genome; Viral Hemorrhagic Fevers; Viral Proteins; Virion; Virus; Virus Assembly; Virus Diseases; Visualization; West Nile; Work; Yellow Fever; ZIKA; ZIKV infection; Zika Virus; aptamer; arthropod-borne; candidate selection; combat; confocal imaging; design; electron tomography; genome-wide; genomic RNA; knock-down; molecular imaging; mutant; mutation screening; novel; prevent; protein biomarkers; recruit; retrograde transport; single molecule; small hairpin RNA; spatiotemporal; targeted treatment; tool; trafficking; transmission process; viral RNA; viral transmission; virus host interaction; virus identification

Arthropod-borne flaviviruses such as Zika, dengue, West Nile, and Powassan viruses cause hemorrhagic fever, congenital diseases, and fatal encephalitis in humans. Zika virus (ZIKV) has the unique ability of human-to- human transmission vertically from mother to fetus and horizontally through sexual contact. In the current proposal, we identify a previously undefined cellular mechanism of ZIKV assembly in live placental cells and aim to characterize the underlying mechanisms of formation and intracellular trafficking of modified membrane structures that facilitate maturation and release. We present preliminary data supporting our novel hypothesis that aptamer tagging of genomic RNA and using fluorescent-protein tagged capsid and nonstructural protein 2A (NS2A), we can visualize and understand mechanisms of virus assembly and virus-host interactions in live cells. By creating a library of mutant ZIKV for live imaging, we identified critical amino acids in capsid protein and NS2A coordinating virus assembly. Using tagged NS2A ZIKV, we present the first viral and host interactome of NS2A from infected cells that have thus far evaded mass spectrometry approaches and identified NS2A-interacting host proteins associated with microcephaly, RNA trafficking, and ER modifications. Using confocal and transmission electron microscopy, we found that ZIKV NS4B modifies the canonical secretory pathway and mediates homotypic fusion of vesicles originating from the ER exit sites forming large perinuclear structures near the Golgi apparatus. Building on our preliminary data and using unique ZIKV infectious clones and tools we have so far developed; we propose a rigorous set of experiments designed to test our hypothesis that flaviviruses modify the ER and host secretory pathways to form large vesicular structures that facilitate assembly and intracellular trafficking. First, using a library of labeled viral RNA and protein constructs with confocal imaging, we will confirm the fate of viral RNA, identify the specific regions of C, NS2A, and RNA that may participate in virus budding and interaction with viral and host proteins, and evaluate whether RNA interacting proteins facilitate assembly (Aim 1). Second, using an advanced affinity purification-mass spectrometry and siRNA and CRISPR knockdown approach, we will determine the genomic pathways in the ER that are key for virus production and cellular membrane modification (Aim 2). And third, we will investigate the ER exit of assembled viruses, NS4B mediated large vesicle formation, and vesicular retrograde transport via microtubules and determine its effect on the dynamics of ZIKV maturation (Aim 3). Our findings will establish a previously undescribed and essential cellular mechanism for the assembly of ZIKV and identify critical targets for intervention in ZIKV infections and other related viruses, addressing a significant global public health need and contributing to the NIAID mission to understand, treat, and prevent infectious diseases. This knowledge can generate new ER-associated targets for therapeutic intervention to mitigate viral transmission at the maternal-fetal interface.

节肢动物传播的黄病毒如寨卡病毒、登革热病毒、西尼罗河病毒和波瓦桑病毒在人类中引起出血热、先天性疾病和致命性脑炎。寨卡病毒（ZIKV）具有独特的能力，可以通过母婴垂直传播和通过性接触水平传播。在本提案中，我们鉴定了活胎盘细胞中ZIKV组装的先前未定义的细胞机制，并且旨在表征促进成熟和释放的修饰的膜结构的形成和细胞内运输的潜在机制。我们目前的初步数据支持我们的新假设，基因组RNA的适体标记，并使用荧光蛋白标记的衣壳和非结构蛋白2A（NS 2A），我们可以可视化和了解活细胞中的病毒组装和病毒-宿主相互作用的机制。通过创建用于活体成像的突变体ZIKV文库，我们鉴定了衣壳蛋白和NS 2A协调病毒组装的关键氨基酸。使用标记的NS 2A ZIKV，我们提出了来自感染细胞的NS 2A的第一个病毒和宿主相互作用组，这些细胞迄今为止已经逃避了质谱方法，并鉴定了与小头畸形、RNA运输和ER修饰相关的NS 2A相互作用宿主蛋白。使用共聚焦和透射电子显微镜，我们发现ZIKV NS 4 B修饰经典分泌途径并介导源自ER出口位点的囊泡的同型融合，在高尔基体附近形成大的核周结构。基于我们的初步数据并使用我们迄今为止开发的独特ZIKV感染性克隆和工具;我们提出了一组严格的实验，旨在测试我们的假设，即黄病毒修饰ER和宿主分泌途径以形成促进组装和细胞内运输的大囊泡结构。首先，使用标记的病毒RNA和蛋白质构建体的文库，通过共聚焦成像，我们将确认病毒RNA的命运，鉴定可能参与病毒出芽和与病毒和宿主蛋白相互作用的C、NS 2A和RNA的特定区域，并评估RNA相互作用蛋白是否促进组装（目的1）。其次，使用先进的亲和纯化-质谱法和siRNA和CRISPR敲低方法，我们将确定ER中对病毒产生和细胞膜修饰至关重要的基因组途径（目的2）。第三，我们将研究组装病毒的ER退出、NS 4 B介导的大囊泡形成和通过微管的囊泡逆行转运，并确定其对ZIKV成熟动力学的影响（目的3）。我们的研究结果将为ZIKV的组装建立一种以前未描述的基本细胞机制，并确定干预ZIKV感染和其他相关病毒的关键靶标，解决重大的全球公共卫生需求，并为NIAID理解，治疗和预防传染病的使命做出贡献。这一知识可以产生新的ER相关的治疗干预目标，以减轻病毒在母胎界面的传播。