Definition of Angular Dependence of 1H-15N Coupling Constants in Amino Sugars
Definition of Angular Dependence of 1H-15N Coupling Constants in Amino Sugars
批准号:
7734794
负责人:
rachel schneerson
金额:
$6.78万
依托单位国家:
美国
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财政年份:
--
资助国家:
美国
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未结题
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至
关键词:
AcetylgalactosamineAcetylglucosamineAgreementAmino SugarsAminoglycoside AntibioticsBacterial PolysaccharidesCell NucleusCouplingD-mannosamineDataDependenceEquationGalactosamineGillsGlucosamineHydrochloride SaltHydrogenMeasurementMeasuresMethodsModelingMolecularN-acetyl-D-mannosamineNitrogenObject AttachmentOxygenProceduresProtonsRangeResolutionSolventsStructurebasemolecular dynamicsmolecular mechanicsmolecular modelingpyranosequantum
中文摘要
对研究对象氨基糖(天然丰度为15N)的一维(1D) 1H谱和一维1H-15N carr - purcell - meiboomm - gill异核单量子多键相关(CPMG-HSQMBC) NMR谱进行了全面分析,得到的3JHCCN偶联常数与分子几何结构相关。这些氨基糖包括那些通常存在于细菌多糖中的氨基糖,包括d -氨基葡萄糖,d -甘露糖胺和d -半乳糖胺,在本研究中作为它们的n -乙酰和盐酸衍生物。n -乙酰- d -葡萄糖胺、n -乙酰- d -甘露糖胺和n -乙酰- d -半乳糖胺的α和β吡喃糖异头的几何形状已通过分子动力学(MD)计算和分子力学(MM)的能量最小化计算,以及隐式溶剂来确定。该分子模型研究得出了与3JHCCN偶联常数测量值相关的相邻氮氢二面角(phi)值。
英文摘要
The one-dimensional (1D) 1H spectra and 1D 1H-15N Carr-Purcell-Meiboom-Gill heteronuclear single quantum, multiple bond correlation (CPMG-HSQMBC) NMR spectra of the subject amino sugars (with 15N at natural abundance) have been analyzed completely, and the resulting 3JHCCN coupling constants correlated with molecular geometry. These amino sugars comprise those that are commonly present in bacterial polysaccharides, including D-glucosamine, D-mannosamine, and D-galactosamine, in this study as their N-acetyl and hydrochloride derivatives. The geometries of the alpha and beta pyranose anomers of N-acetyl-D-glucosamine, N-acetyl-D-mannosamine, and N-acetyl-D-galactosamine have been defined by molecular dynamics (MD) calculations with energy minimization by molecular mechanics (MM), and implicit solvent. This molecular modeling study yielded values of the vicinal nitrogen-hydrogen dihedral angles (phi) that have been correlated with the measured values of the 3JHCCN coupling constant.
Gauche arrangements of the hydrogen and nitrogen-15 nuclei in the common N-acetyl amino sugars were found by MD/MM to have phi values in the range 52-66, which corresponded to 3JHCCN values of 0.8-2.5 Hz. Trans orientations of the hydrogen and nitrogen-15 nuclei displayed phi values in the range 175-178 in MD/MM, which correlated with larger 3JHCCN values in the range 3.2-4.0 Hz. However, if the coupling involves the anomeric proton H-1, then the magnitude of the trans coupling constant is reduced by the electronegativity of the pyranose ring oxygen to 2.7-2.8 Hz. Thus, it appears that the magnitude of the 3JHCCN coupling constant could be used to distinguish gauche and trans orientations of vicinal nitrogen-15proton pairs in amino saccharides, thus offering the possibility of defining the stereochemical configuration (axial or equatorial) of the nitrogen atom in unknown structures. Although these common amino sugar models contain only limited ranges of 15N-1H dihedral angles, the results for their 3JHCCN coupling constants are in general agreement with those measured for the organic-soluble amino sugar derivatives, from which we previously formulated a Karplus-type equation: 3JHCCN = 3.1 cos2 phi - 0.6 cos phi + 0.4
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A Karplus equation for (3)J(HCCN) in amino sugar derivatives.
氨基糖衍生物中 (3)J(HCCN) 的 Karplus 方程。
DOI:
10.1016/j.carres.2007.02.023
发表时间:
2007
期刊:
Carbohydrate research
影响因子:
3.1
作者:
[Coxon,Bruce]
通讯作者:
Coxon,Bruce
Peptide-Protein Conjugate Vaccines
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批准号:7334147
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负责人:rachel schneerson
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Definition of Angular Dependence of 1H-15N Coupling Cons
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批准号:7334229
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负责人:rachel schneerson
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Neonatal respiratory distress related to colonization wi
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批准号:7334194
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Design, Synthesis & Testing Of Recombinant Proteins For
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Peptide-Protein Conjugate Vaccines
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资助金额:$65.99万
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负责人:rachel schneerson
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Definition of Angular Dependence of 1H-15N Coupling Constants in Amino Sugars
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批准号:7594245
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资助金额:$8.11万
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Peptide-Protein Conjugate Vaccines
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批准号:7212387
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Verification of the Structures of Bacterial Polysacchari
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NMR Verification of Structures of Bacterial Saccharide Precursors for Vaccines
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D&P Replacement of DTP w/Genetically Inactivated Toxin
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Lineage ST-17 complex group B strep. are more virulent t
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NMR Verification of Structures of Bacterial Saccharide Precursors for Vaccines
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资助金额:$13.31万
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Peptide-Protein Conjugate Vaccines
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