Transacting Genes Regulating Recombination Hotspot Activities

调节重组热点活动的基因交易

• 批准号: 7898992
• 负责人: KENNETH PAIGEN
• 金额: $ 31.61万
• 依托单位: JACKSON LABORATORY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-08-17 至 2011-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7898992
• 关键词: Affect; Alleles; Animals; Architecture; Backcrossings; Behavior; Behavior Control; Biological; Biological Assay; Biological Process; Biology; Chromatids; Chromosomal Rearrangement; Chromosome Mapping; Cloning; Complement; Constitution; DNA Double Strand Break; Data; Dependence; Disease; Disease susceptibility; Distal; Distant; Double Strand Break Repair; Elements; Escherichia coli; Event; Frequencies; Gene Combinations; Gene Conversion; Gene Proteins; Gene Rearrangement; Generations; Genes; Genetic; Genetic Crossing Over; Genetic Recombination; Genome; Genomics; Goals; Health; Human; Individual; Infertility; Intervention; Linkage Disequilibrium; Literature; Location; Mammals; Maps; Medicine; Meiotic Recombination; Molecular; Molecular Models; Mus; Organism; Outcome; Pathway interactions; Pattern; Phenotype; Population; Predisposition; Preventive; Process; Property; Proteins; Quantitative Trait Loci; Relative (related person); Research; Resolution; Rest; Role; Sex Behavior; Site; Synaptonemal Complex; System; Techniques; Testing; Therapeutic; Time; Trans-Activators; Transact; Variant; Vascular Plant; Yeasts; dosage; gene cloning; genome wide association study; human disease; improved; insight; interest; male; molecular modeling; novel; novel strategies; public health relevance; repaired; research study; segregation; sperm cell; trait; tumor progression; tumorigenesis

DESCRIPTION (provided by applicant): Genetic recombination is responsible for the re-assortment of alleles at each generation; for our own species, this means the assortment of disease susceptibility alleles across generations and populations, and for all organisms, generating the substrates of evolutionary change. While there has been considerable progress in understanding the molecular details underlying recombination processes, especially in yeast species, among mammalian organisms we are still relatively ignorant of many aspects of recombination biology, including the factors determining the location and relative activity of individual recombination hotspots, and the choice between the crossover and non-crossover (gene conversion) pathways as outcomes of the recombination process. We have now discovered the existence of a trans-acting regulatory system whose products control the behavior of individual hotspots. We compared the hotspot recombination maps of mice heterozygous C57BL/6J and CAST/EiJ for the distal half of Chr 1 when the remaining genomic regions were either homozygous B6 or heterozygous B6/CAST. The activities of some hotspots in this region are dependent on the presence of CAST alleles at distant genes and others are suppressed by such alleles. CAST activated hotspots are controlled in an all-or-none fashion; we do not know about suppressed hotspots. This discovery opens the possibility of new approaches to understanding hotspot behavior by characterizing the genetic architecture of the control system and whether it regulates the formation of the double strand DNA breaks that initiate recombination or regulates the choice between crossover and noncrossover pathways. These findings will eventually open the way to identifying a new class of molecules involved in recombination processes and elucidating recombination control mechanisms. We will determine the number and the location of the trans-acting genes and how they interact; the dependence of hotspot activity on the dosage of trans-acting gene alleles, and, using a new cloning assay for characterizing recombination events at individual hotspots, determine whether the various trans-acting genes control both gene conversion and crossing over, or are specific to crossing over. PUBLIC HEALTH RELEVANCE: Our genetic heritage has a strong influence on our susceptibility to all of the common diseases that afflict us. Mapping the genes responsible for these susceptibilities provides a means of identifying targets for intervention, both preventive and therapeutic, and for developing a personalized medicine adapted to our individual constitutions. The proposed experiments will help us understand how combinations of genes are transmitted from one generation to the next and how we can improve our ability to identify the genes underlying disease susceptibility. Our project thus has relevance to all issues of health and disease that have any genetic component, and specifically to problems of tumorigenesis and infertility that involve DNA rearrangements and repair.

描述(申请人提供)：基因重组负责每一代等位基因的重新分类；对于我们自己的物种，这意味着跨世代和种群的疾病易感等位基因的分类，以及对所有生物体来说，产生进化变化的底物。虽然在理解重组过程的分子细节方面已经取得了相当大的进展，特别是在酵母物种中，但在哺乳动物中，我们仍然对重组生物学的许多方面知之甚少，包括决定单个重组热点的位置和相对活性的因素，以及作为重组过程的结果在交叉和非交叉(基因转换)途径之间的选择。 我们现在已经发现了一个跨行为监管系统的存在，其产品控制着个别热点的行为。我们比较了C57BL/6J杂合小鼠和Cast/EIJ杂合小鼠的Chr1基因远端半部分的热点重组图谱，其余基因组区域为纯合子B6或杂合子B6/Cast。该区域一些热点的活性依赖于远端基因上CAST等位基因的存在，而另一些热点则被这些等位基因抑制。强制转换激活的热点是以全有或全无的方式控制的；我们不知道是否有抑制的热点。 这一发现为通过表征控制系统的遗传结构以及它是否调节启动重组的双链DNA断裂的形成或调节交叉和非交叉途径之间的选择来理解热点行为提供了新的方法。这些发现最终将为识别参与重组过程的一类新分子和阐明重组调控机制开辟道路。 我们将确定反式作用基因的数量和位置以及它们如何相互作用；热点活性对反式作用基因等位基因剂量的依赖；并使用一种新的克隆实验来表征单个热点上的重组事件，以确定各种反式作用基因是同时控制基因转换和交换，还是特定于交换。 与公共卫生相关：我们的基因遗传对我们对所有折磨我们的常见疾病的易感性有很大的影响。绘制导致这些易感性的基因图谱提供了一种手段，可以确定预防和治疗干预的目标，并开发适合我们个人体质的个性化药物。拟议中的实验将帮助我们了解基因组合是如何从一代传递到下一代的，以及我们如何提高识别疾病易感性基因的能力。因此，我们的项目与所有具有任何遗传成分的健康和疾病问题有关，特别是涉及DNA重排和修复的肿瘤形成和不孕问题。