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Sugar signaling networks detected by high content fluxomics

高内涵通量组学检测糖信号网络

基本信息

批准号：
8068435
负责人：
WOLF B FROMMER
金额：
$ 1万
依托单位：
CARNEGIE INSTITUTION OF WASHINGTON, D.C.
依托单位国家：
美国
项目类别：
财政年份：
2010
资助国家：
美国
起止时间：
2010-05-20 至 2010-08-19
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8068435
关键词：
Acclimatization Affect Behavior Bioinformatics Biological Assay Biological Models Brain Carbohydrates Cell Line Cell Proliferation Cell model Cell surface Cells Collection Data Databases Development Diabetes Mellitus Disaccharides Disease Drops Drug Delivery Systems Energy Supply Ensure Enzymes Equipment and supply inventories Fluorescence Resonance Energy Transfer Gene Family Genes Genome Glucose Glucose Transporter Glucose-6-Phosphate Glutamates Goals Health Hepatocyte Hexoses Human Human Cell Line Image Individual Insulin Intervention Ions Isoenzymes Kinetics Knock-out Knowledge Life Liver Liver neoplasms Malignant Neoplasms Malignant neoplasm of liver Mammalian Cell Measures Metabolic Metabolic Diseases Metabolic Pathway Metabolism Methods Microfluidics Modeling Molecular Monitor National Institute of Diabetes and Digestive and Kidney Diseases Obesity Organ Pancreas Pathway Analysis Pentoses Peripheral Pharmaceutical Preparations Physiological Property Regulation Resolution Role Route Saccharomyces Saccharomyces cerevisiae Scientist Screening procedure Signal Pathway Signal Transduction Signaling Molecule Signaling Protein Small Interfering RNA Sugar Phosphates Sum System Systems Biology Time Tissues Yeasts base cancer cell comparative drug discovery enzyme activity experience extracellular genetic variant glucose monitor glucose transport glucose uptake glycogen metabolism hepatoma cell hexokinase high throughput screening improved inorganic phosphate insight member mutant nanosensors neoplastic cell novel oncology overexpression receptor response sensor sugar tool uptake

项目摘要

DESCRIPTION (provided by applicant): Tight control over glucose levels is crucial for human health. Cells constantly monitor extracellular and cytosolic sugar levels. Acclimation of cellular uptake and release in liver as well as peripheral organs is achieved by changing the kinetic properties of glucose transporters and metabolic enzymes. Our goal is to identify all genes involved in regulating glucose transport, metabolism and compartmentation, and to unravel the flux control networks by fluxomics. The understanding of the networks provides an advanced base for intervention in health-related conditions such as Diabetes, obesity or cancer. Glucose transporters, hexokinases, and enzymes related to glucose and glycogen metabolism are encoded by gene families. The members differ in kinetic properties. We understand large parts of the indirect glucose effect on pancreatic insulin release and the effect of insulin in glucose transporrt activity as a means of inter-organ regulation; less is known about sugar signaling at the cellular basis. Multiparallel sugar signaling cascades control metabolism in yeast;, their interplay is not understood fully yet. This project intends to systematically advance the identification of the signaling networks using fluxomics in yeast and human. The Frommer lab developed genetically encoded FRET sensors for monitoring changes of cytosolic glucose levels. The nanosensors can be used in high-throughput screens to determine flux in genetic variants, i.e. knock-out and siRNA collections. Microfluidic and microplate platforms are developed for static and kinetic screens. The project will systematically identify genes affecting flux components in two models: the unicellular yeast Saccharomyces, and in human HepG2 cells as a model for liver and cancer. Hits identified in the screen will be characterized using FLIP sensors for other sugars, phosphate and by transport and metabolite analyses. The role of the newly identified genes will be compared in different human cell lines including primary hepatocytes. Overexpression and double mutant/double siRNA will enable comparison of sugar signaling networks. This project is relevant for metabolic diseases such as Diabetes and obesity (NIDDK), and due to the importance of sugars for cell proliferation for cancer (NCI), as well as other diseases that arise as a consequence of altered glucose levels. The networks and databases developed in this project promise to provide novel screening methods for novel drugs as well as help identifying new drug targets.

描述（由申请人提供）：严格控制葡萄糖水平对人体健康至关重要。细胞不断监测细胞外和细胞溶质糖水平。通过改变葡萄糖转运蛋白和代谢酶的动力学特性，实现肝脏和外周器官中细胞摄取和释放的适应。我们的目标是确定所有参与调节葡萄糖转运，代谢和区室化的基因，并通过通量组学解开通量控制网络。对这些网络的了解为糖尿病、肥胖症或癌症等健康相关疾病的干预提供了先进的基础。葡萄糖转运蛋白、己糖激酶以及与葡萄糖和糖原代谢相关的酶由基因家族编码。各成员的动力学性质不同。我们了解大部分的间接葡萄糖对胰腺胰岛素释放的影响，以及胰岛素对葡萄糖转运活性的影响，作为器官间调节的一种手段;对细胞基础上的糖信号传导知之甚少。多平行糖信号级联控制酵母的代谢，它们之间的相互作用尚未完全理解。该项目旨在系统地推进使用通量组学在酵母和人类中识别信号网络。Frommer实验室开发了基因编码的FRET传感器，用于监测细胞溶质葡萄糖水平的变化。纳米传感器可用于高通量筛选，以确定遗传变体中的通量，即敲除和siRNA收集。微流控和微孔板平台被开发用于静态和动态筛选。该项目将系统地识别影响两种模型中通量组分的基因：单细胞酵母菌和作为肝脏和癌症模型的人类HepG 2细胞。筛选中识别的命中将使用FLIP传感器对其他糖、磷酸盐进行表征，并通过转运和代谢物分析进行表征。新鉴定的基因的作用将在包括原代肝细胞在内的不同人类细胞系中进行比较。过表达和双突变体/双siRNA将能够比较糖信号传导网络。该项目与糖尿病和肥胖症（NIDDK）等代谢疾病相关，并且由于糖对癌症（NCI）细胞增殖的重要性，以及由于葡萄糖水平改变而引起的其他疾病。该项目开发的网络和数据库有望为新药提供新的筛选方法，并帮助识别新的药物靶点。

项目成果

期刊论文数量（23）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

Plasma membrane microdomains regulate turnover of transport proteins in yeast.

DOI：
10.1083/jcb.200806035
发表时间：
2008-12-15
期刊：
The Journal of cell biology
影响因子：
0
作者：
Grossmann G;Malinsky J;Stahlschmidt W;Loibl M;Weig-Meckl I;Frommer WB;Opekarová M;Tanner W
通讯作者：
Tanner W

Dynamic analysis of cytosolic glucose and ATP levels in yeast using optical sensors.