LeuT Membrane Transporter Dynamics Determined by EPR and Computational Techniques

由 EPR 和计算技术确定的 LeuT 膜转运蛋白动力学

• 批准号: 8111988
• 负责人: Nathan Alexander
• 金额: $ 2.64万
• 依托单位: VANDERBILT UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-07-01 至 2012-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8111988
• 关键词: Algorithms; Amphetamines; Benchmarking; Binding; Binding Sites; Cocaine; Collaborations; Complex; Computational Technique; Computational algorithm; Crystallins; Data; Data Collection; Development; Disease; Dopamine; Education; Electron Spin Resonance Spectroscopy; Environment; Exposure to; Family; Health; Heart failure; Homologous Gene; Hypertension; Ions; Leucine; Measurement; Measures; Mediating; Membrane; Membrane Proteins; Membrane Transport Proteins; Mental Health; Methods; Modeling; Molecular Conformation; Molecular Machines; Motion; Movement; Muramidase; Neurotransmitters; Norepinephrine; Parkinson Disease; Pathway interactions; Positioning Attribute; Process; Property; Protein Conformation; Proteins; Psyche structure; Relative (related person); Research; Research Infrastructure; Resolution; Resources; Serotonin; Side; Sodium; Solvents; Structure; System; Techniques; Therapeutic; Transport Process; Universities; Work; combat; comparative; extracellular; flexibility; improved; insight; member; molecular dynamics; physical conditioning; protein function; protein structure; protein structure prediction; reuptake; structural biology; symporter; three dimensional structure

DESCRIPTION (provided by applicant): The serotonin, dopamine, and norepinephrine neurotransmitter transporters (SERT, DAT, and NET, respectively) are involved in a vast array of physical and mental health-related processes ranging from hypertension and heart failure to Parkinson's disease. SERT and DAT are also binding targets of cocaine and amphetamines. Elucidation of the major conformational changes these transporters undergo to regulate the flow of substrate would facilitate the development of pharmacological compounds to combat these ailments by providing an improved understanding of how these complex molecular machines function. SERT, DAT, and NET belong to the neurotransmitter sodium symporter (NSS) family of transporters. Currently, no high resolution structure exists for any member of the NSS family. However, a high resolution crystal structure for the bacterial homolog LeuT has provided insights into the structure and substrate binding of this important transporter family. However, while this crystal structure highlights a single closed- closed state in the transport cycle, multiple other conformations important for function remain unknown. The current work will utilize the NSS homolog LeuT crystal structure and electron paramagnetic resonance (EPR) distance and accessibility data in order to investigate how substrate passage is controlled through conformational changes. To achieve this end, a computational algorithm will be developed which will provide a continuous picture of LeuT as it progresses from one state to another. The second state will be described by the EPR data collected around the gating residues of LeuT. The algorithm will consist of an energy minimization process which is driven by the EPR data to reach the second conformation through a biologically relevant pathway. Such a method will provide a description of how LeuT changes structurally in order to control transport. The structural dynamics determined for LeuT will provide new insights into the homologous transporters of the NSS family. The quality of the dynamic model for LeuT will be validated through additional EPR data collection which will support or refute specific aspects of the prediction. Having a high quality model will allow conclusions for the LeuT system to provide important hypotheses for the NSS family which will be central to understanding the specific conformational motions that are necessary to regulate transport. PUBLIC HEALTH RELEVANCE: Having an improved understanding of how the NSS family regulates transport will facilitate the development of more specific therapeutics. The result will be pharmacological compounds which are potently effective and readily available for a large number of mental and physical diseases.

描述（由申请人提供）：血清素、多巴胺和去甲肾上腺素神经递质转运蛋白（分别为SERT、DAT和NET）参与了从高血压和心力衰竭到帕金森病的大量身心健康相关过程。SERT和DAT也是可卡因和安非他明的结合靶点。阐明这些转运蛋白为调节底物流动而发生的主要构象变化，将有助于开发药物化合物，通过提供对这些复杂分子机器如何发挥作用的更好理解来对抗这些疾病。SERT、DAT和NET属于神经递质钠同向转运体（NSS）家族的转运体。目前，NSS家族的任何成员都不存在高分辨率结构。然而，细菌同系物LeuT的高分辨率晶体结构提供了深入了解这个重要的转运蛋白家族的结构和底物结合。然而，虽然这种晶体结构突出了运输循环中的单一闭合-闭合状态，但对功能重要的多种其他构象仍然未知。目前的工作将利用NSS同系物LeuT晶体结构和电子顺磁共振（EPR）的距离和可及性数据，以研究如何通过构象变化控制底物通道。为了实现这一目标，将开发一种计算算法，该算法将提供LeuT从一种状态到另一种状态的连续图像。第二种状态将通过在LeuT的门控残基周围收集的EPR数据来描述。该算法将由能量最小化过程组成，该过程由EPR数据驱动，通过生物学相关途径达到第二构象。这种方法将提供LeuT如何在结构上改变以控制运输的描述。LeuT确定的结构动力学将为NSS家族的同源转运蛋白提供新的见解。LeuT动态模型的质量将通过额外的EPR数据收集来验证，这些数据将支持或反驳预测的特定方面。有一个高质量的模型将允许LeuT系统的结论，提供重要的假设，NSS家庭，这将是中央了解特定的构象运动是必要的，以调节运输。公共卫生关系：对NSS家族如何调节转运有更好的理解将有助于开发更特异的治疗方法。其结果将是药理学化合物，这些化合物对许多精神和身体疾病有效且容易获得。