Femtosecond Coherence Spectroscopy and Ultrafast Kinetic Investigations of Heme P

血红素 P 的飞秒相干光谱和超快动力学研究

• 批准号: 8000136
• 负责人: Paul M. Champion
• 金额: $ 3万
• 依托单位: NORTHEASTERN UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-01-01 至 2010-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8000136
• 关键词: Affect; Architecture; Basic Science; Behavior; Binding; Biochemical Reaction; Biological Models; Biological Process; Camphor 5-Monooxygenase; Cell Nucleus; Charge; Chemistry; Cytochrome P450; DNA Sequence Rearrangement; Discrimination; Distal; Docking; Electron Transport; Electronics; Entropy; Environment; Equilibrium; Event; Exhibits; Frequencies; Genetic Recombination; Goals; Grant; Health; Heme; Heme Group; Heme Iron; Hemeproteins; Human body; Investigation; Iron; Iron-Sulfur Proteins; Kinetics; Lead; Learning; Length; Ligand Binding; Ligands; Measures; Mediating; Metabolic Diseases; Metalloproteins; Metals; Methodology; Methods; Modeling; Molecular; Monitor; Motion; Myoglobin; Neutrons; Nitric Oxide Synthase; Nitrogen; Nuclear; Optics; Oxidation-Reduction; Oxygen; Peroxidases; Phase; Physiological; Play; Positioning Attribute; Process; Production; Proteins; Pump; Pyrroles; Reaction; Research; Role; Signal Transduction; Soluble Guanylate Cyclase; Solutions; Specificity; Spectrum Analysis; Stretching; Structure; Sulfur; System; Techniques; Temperature; Testing; Time; Translating; Transport Process; Water; Work; absorption; aqueous; biological systems; chemical reaction; cofactor; cytochrome c; density; falls; insight; nitrophorin; protein complex; protein function; public health relevance; vibration

DESCRIPTION (provided by applicant): This project aims to extend our understanding of the structure, function, and dynamics of heme proteins such as cytochrome P450, mammalian peroxidases, nitric oxide synthase, soluble guanylate cyclase, nitrophorin, and cytochrome c. These proteins are involved in broad array of catalytic, signaling, and electron transport processes and are capable of an amazingly broad range of functions, even when the heme axial ligands are identical. This indicates that the protein architecture, and its influence on the heme structure, plays an important functional role. By using coherence spectroscopy, a femtosecond optical "pump-probe" technique, the "soft" out-of-plane (OOP) low-frequency vibrational modes of the heme can be excited and analyzed even in an aqueous environment. These vibrational modes have not been documented previously because they are difficult to access using traditional spectroscopic methods. They fall in the region of ambient thermal excitations (<200cm-1 ~300K) and are therefore most likely to be utilized as reaction coordinates by proteins. The observed coherence spectral intensities of these "soft" modes depend upon the magnitude of the heme structural distortions that are induced by the protein architecture. These OOP heme motions are functionally significant, as demonstrated by the importance of the heme "doming" mode in the diatomic ligand binding reaction. The rich spectrum of the low-frequency heme motions is just beginning to be appreciated, as a wider variety of proteins and model compounds is examined. This project aims to explore the functional role of both static distortions and thermally excited low-frequency vibrations in heme proteins. Distortions (such as heme "ruffling" and "saddling") that alter the electronic orbital interactions between the iron atom and its surrounding molecular framework are hypothesized to affect the redox potential of the metal center. Vibrational motions along these same, thermally accessible, OOP coordinates are excellent candidates to mediate and control electron transfer. Coherence spectroscopy is uniquely positioned to probe these modes in aqueous solution. For example, we will examine electron transfer partners, such as Pdx and CYP101, in order to monitor changes in the low frequency spectrum that occur when the protein complex is formed. The low frequency modes of Fe-S proteins will also be examined. Kinetic probes on ultrafast timescales, stretching over 10 decades in time, will be used to study the rapid time-scale, non-equilibrium processes, that take place immediately following the electronic rearrangements associated with biochemical reactions. For example, the two geminate phases for oxygen rebinding to the heme in myoglobin exhibit very different Arrhenius prefactors, suggesting that the entropic barrier for recombination is time dependent. Such non-equilibrium processes will be studied to learn if they allow heme proteins to enhance discrimination between different classes of diatomic ligands. PUBLIC HEALTH RELEVANCE: This project has a wide range of health related implications involving heme and iron-sulfur metalloproteins. Many metabolic disease states involve disrupted catalytic, signaling, and/or electron transport processes that involve such proteins. All biological processes that involve molecular electron transport, and/or utilize the heme or iron-sulfur cofactors, are related to this research. A fundamental understanding of how the protein architecture interacts with the metal co-factors, and how this translates into vibrational dynamics and function at the molecular level, will lead to deeper insights for those concerned with the treatment of metabolic disorders at any level. Basic research on metalloproteins is essential to our composite understanding of the human body. This project is deeply involved with investigations of these systems at a fundamental level.

描述(申请人提供)：这个项目旨在扩大我们对细胞色素P450、哺乳动物过氧化物酶、一氧化氮合酶、可溶性鸟苷环化酶、硝基酚和细胞色素c等血红素蛋白的结构、功能和动力学的理解。这些蛋白参与广泛的催化、信号和电子传递过程，并能够发挥令人惊讶的广泛的功能，即使在血红素轴向配体相同的情况下也是如此。这表明蛋白质的结构及其对血红素结构的影响起着重要的功能作用。通过使用相干光谱，一种飞秒光学“泵浦-探测”技术，即使在水环境中，也可以激发和分析血红素的“软”离面(OOP)低频振动模式。这些振动模式以前没有被记录下来，因为它们很难使用传统的光谱方法来获取。它们落在环境热激发区(&lt；200 cm-1~300K)，因此最有可能被蛋白质用作反应坐标。观察到的这些“软”模的相干光谱强度取决于由蛋白质结构引起的血红素结构扭曲的程度。这些面向对象的血红素运动在功能上具有重要意义，这从血红素“穹顶”模式在双原子配体结合反应中的重要性可见一斑。随着对更多种类的蛋白质和模型化合物的研究，人们才刚刚开始意识到低频血红素运动的丰富频谱。该项目旨在探索血红素蛋白中静态扭曲和热激发低频振动的功能作用。改变铁原子与其周围分子骨架之间的电子轨道相互作用的扭曲(如血红素“褶皱”和“鞍状”)被假设为影响金属中心的氧化还原电位。沿着这些相同的、热可及的OOP坐标的振动运动是调节和控制电子转移的极佳候选者。相干光谱在探测水溶液中的这些模式方面具有独特的地位。例如，我们将检查电子转移伙伴，如PDX和CYP101，以监测蛋白质复合体形成时发生的低频谱变化。还将研究铁-S蛋白的低频模式。超快时间尺度上的动力学探测器，跨越10年的时间，将被用于研究快速的时间尺度的非平衡过程，这些过程紧随与生化反应相关的电子重排而发生。例如，肌红蛋白中氧与血红素重新结合的两个双金属相表现出非常不同的Arrhenius前因子，这表明重新结合的熵障碍是时间相关的。将对这种非平衡过程进行研究，以了解它们是否允许血红素蛋白增强不同类别双原子配体之间的区别。公共卫生相关性：该项目具有广泛的与健康相关的影响，涉及到血红素和铁硫金属蛋白。许多代谢性疾病状态涉及涉及此类蛋白质的催化、信号和/或电子传递过程的中断。所有涉及分子电子传递的生物过程，和/或利用血红素或铁硫辅助因子，都与这项研究有关。对蛋白质结构如何与金属辅助因子相互作用，以及如何在分子水平上转化为振动动力学和功能的基本理解，将为那些关心在任何水平上治疗代谢紊乱的人带来更深层次的见解。对金属蛋白的基础研究对于我们对人体的综合理解是必不可少的。该项目深入参与了对这些系统的基础研究。