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Phosphoproteomic Analysis of T Cell Activation Pathways

T 细胞激活途径的磷酸化蛋白质组学分析

基本信息

批准号：
8661694
负责人：
ARTHUR Robert SALOMON
金额：
$ 38.21万
依托单位：
BROWN UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2010
资助国家：
美国
起止时间：
2010-06-15 至 2017-05-07
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8661694
关键词：
Binding Biological Assay Cell Line Cell membrane Cell physiology Cells Cellular Immunity Cellular Structures Classification Collection Complex Critical Pathways Data Disease Equilibrium Event Extracellular Signal Regulated Kinases Foundations Guanine Nucleotide Exchange Factors IL2-Inducible T-Cell Kinase Immune response Immunologic Deficiency Syndromes Infection Insulin-Dependent Diabetes Mellitus Interleukin-2 Jurkat Cells Knowledge Leukocytes Location Lymphocyte MEKs Malignant Neoplasms Maps Mass Spectrum Analysis Mediating Methods Metric Microbe Mitogen-Activated Protein Kinase Kinases Modeling Molecular Monitor Pathway interactions Phosphatidylinositols Phosphorylation Phosphorylation Site Phosphotransferases Physiology Play Positioning Attribute Process Production Protein Tyrosine Kinase Protein Tyrosine Phosphatase Proteins Proteomics Receptor Signaling Recruitment Activity Regulation Relative (related person)Rheumatoid Arthritis Role Scaffolding Protein Signal Pathway Signal Transduction Signaling Protein Site Speed Stimulus Structure Subcellular structure Systemic Lupus Erythematosus T-Cell Activation T-Cell Activation Pathway T-Cell Receptor T-Lymphocyte Techniques Test Result Testing Therapeutic Therapeutic Intervention Transcription Factor AP-1 Tyrosine Tyrosine Phosphorylation Site Viral Virus base crosslink delta protein design genetic regulatory protein human PTPRT protein inhibitor/antagonist insight molecular phenotype mutant neoplastic cell novel nuclear factors of activated T-cells pathogen phospholipase C gamma protein kinase C-delta receptor reconstitution release of sequestered calcium ion into cytoplasm response rho skeletal src Homology Region 2 Domain

项目摘要

Signaling networks are crucial for the orchestration of cellular functions in response to stimuli. Knowledge of the structure of these networks provides a basis for understanding the pathological consequences of their malfunction and offers opportunities for designing therapeutic interventions. The complexity of these networks and the speed with which signals are transmitted in cells makes mapping them a formidable challenge. The typical approach for elucidating the structure of cellular signaling networks involves an iterative process of creating signaling protein disruptions, domain mutants and site-directed mutants followed by characterization of each mutant through a battery of cellular activation assays. As a complementary approach, modern phosphoproteomic methods in mass spectrometry can facilitate the hypothesis-driven characterization of signaling pathways by providing a global view of cellular phosphorylation through a variety of activation states or perturbed at specific pathway proteins or phosphorylation sites. This information provides a rational basis for generating hypotheses about signaling pathway structure. We then test resulting hypotheses by monitoring the global consequences of disrupting specific nodes (proteins or phosphorylation sites) in the network. T cells play a central role in cell-mediated immunity against viruses, a variety of microbes, and cancer. The present proposal focuses on the elucidation of the molecular details of the T cell signaling pathway. To gain new insights into the pathways leading to T cell activation, novel phosphoproteomic techniques are combined with traditional methods to provide a detailed view of the network of phosphorylation events in T cells activated through the T cell receptor. The promise of this unique approach is illustrated in preliminary phosphoproteomic studies of T cells with a disrupted receptor proximal protein tyrosine kinase, Zap-70. The expected T cell signaling pathway structure was replicated and 96 novel phosphorylation events were discovered. These novel phosphorylation sites are located both on proteins previously associated with the T cell pathway as well as functionally uncharacterized proteins. We will now test the hypothesis that these novel sites can be placed in specific locations within the pathway through quantitative phosphoproteomic analysis of T cells with disrupted pathway proteins LCK, PLCy1, VAV, and ERK. In particular, the placement of these phosphorylation events relative to the critical pathway protein SLP76 and LAT will be examined in detail through a collection of domain and point mutants, allowing for the precise placement of the novel phosphorylation sites within different signaling pathway branches initiated from these proteins. Testing of a newly postulated, phosphoproteomic data-inspired hypothesis about the Zap-70 dependent regulation of Fyn kinase through PTPa will be explored with classical molecular approaches.

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