Molecular Basis of Cancer Cell Metabolic Reprogramming

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 DESCRIPTION (provided by applicant): Nuclear receptors are critical regulators of liver diseases. Metabolic rewiring in cancer is tightly connected to changes at the epigenetic level, and the interaction of metabolism and epigenetics constitutes a new avenue of cancer biology. Exposure to high concentrations of inorganic arsenic increases the risk of liver cancer. However, the mechanisms of arsenic toxicity remain less well understood. Our past studies have established a feedback regulation of DNA methyltransferase (Dnmt) expression by nuclear receptor small heterodimer partner (SHP). Using unbiased genomic screening approaches and SHP-/- mice, my laboratory recently uncovered the mitochondrial protein pyruvate dehydrogenase kinase 4 (PDK4) as a new putative tumor suppressor that mediates epigenetic control of HCC metabolic reprogramming. The overall objective is to elucidate a novel crosstalk between PDK4 and arsenic in HCC cell metabolism and growth. The central hypothesis is that PDK4 serves as a key nutrient sensor downstream of the mammalian target of rapamycin (mTOR) pathway, acting as a double- edged sword by inhibiting glutamate dehydrogenase (GDH) in glutaminolysis and pyruvate dehygrogenase (PDH) in TCA cycle, two central pathways that fuel cancer metabolism. Furthermore, we postulate that arsenic promotes HCC growth by enhancing epigenetic silencing of PDK4 through Dnmts. Specific Aims: 1) Determine nutrient-mediated PDK4 expression in modulation of mitochondrial glutaminolysis; 2) Determine metabolic reprogramming and altered mitochondrial function caused by PDK4; and 3) Determine the effect of arsenic on epigenetic regulation of PDK4 and hepatocarcinogenesis. The proposed experiments build on our long-standing experience in studying nuclear receptor regulation of HCC development and the appropriate use of knockout mouse models. Key reagents and methodologies required for the study are in hand, including stable PDK4 overexpression and knockdown HCC cells, an orthotopic transplanted liver cancer model, and PDK4-/- mice. High throughout transcriptomics (RNA-seq), metabolomics (GC/MS), genomics (MeDIP), and proteomics (LC-MS/MS) analyses will be employed for the proposed study, which makes the proposal comprehensive, yet feasible. Thus this application is innovative both conceptually and in the implementation of experimental approaches. This study links the emerging, very competitive field of nutrient mediated cancer cell metabolism with epigenetic regulation, and as such is expected to substantially advance our basic understanding of HCC. In addition, the PI has assembled an outstanding research team with appropriate expertise, including the areas of proteomics (Schwartz, Lam), cancer cell metabolism (Ayer), metabolomics (Cox), and environmental toxicants (Delker). The combined expertise of the PI and her collaborators further ensures the success of this project.