Discovering the machinery and mechanism of ERAD-M retrotranslocation

描述(由申请人提供)：通过内质网相关蛋白降解(ERAD)消除错误折叠的蛋白质，确保进入分泌途径的蛋白质正确折叠，并将内质网应激保持在可接受的低水平。ERAD的所有变体都包括一个称为逆转易位的蛋白质易位过程，在这个过程中，泛素化的ERAD亚基由专用机器选择性地从内质网中提取出来，然后被胞浆中的26S蛋白酶体降解。这个项目的总体目标是解开逆转录易位的未知机制。在发现保守的HRD ERAD途径的过程中，我们的实验室开发了各种独特的工具、技术和专业知识，将用于解决紧迫和悬而未决的逆转位问题。具体地说，我将1)对典型的ERAD底物HMG-CoA还原酶进行生化和蛋白质组学分析，以了解其从内质网反向易位的机制，并确定参与这一过程的关键蛋白。此外，我将使用遗传学方法作为一种独立和补充的方法来确定逆转易位因素。它们将包括运行传统的和基于阵列的筛查，以及使用直接的体内和体外分析来验证候选基因。最后，3)我将辨别所有已发现的因素在ERAD每个已知分支中的作用。综上所述，这些研究将揭示ERAD核心的一个关键的、普遍的和保守的过程，涉及管理细胞应激和各种临床疾病。我对酵母的研究将为ERAD的逆转易位过程提供新的基础知识。Erad与衰老、阿尔茨海默病、亨廷顿病、帕金森病和正常的固醇调节等疾病有关，我的研究有助于理解ERAD的缺陷如何与这些过程和疾病相关。

DESCRIPTION (provided by applicant): Elimination of misfolded proteins by ER-associated protein degradation (ERAD) ensures that proteins entering the secretory pathway are correctly folded and that ER stress is maintained at acceptable low levels. All variations of ERAD includes a protein translocation process termed retrotranslocation, in which ubiquitinated ERAD subsrates are selectively extracted by dedicated machinery from the ER before degradation by the cytosolic 26S proteasome. The overall goal of this project is to unravel the unknown mechanism of retrotranslocation. In the course of discovering the conserved HRD ERAD pathway, our laboratory has developed a variety of unique tools, techniques and expertise that will be brought to bear on the pressing and open question of retrotranslocation. Specifically, I will 1) perform biochemical and proteomic analyses on the prototypical ERAD substrate HMG-CoA reductase to understand the mechanism of its retrotranslocation from the ER and identify the key proteins involved in this process. Furthermore, I will 2) employ a genetic approach as an independent and complementary approach to identify retrotranslocation factors. They will include running traditional and array-based screens, combined with validation of candidate genes using direct in vivo and in vitro assays. Finally, 3) I will discern the roles of all discoveed factors in each known branch of ERAD. Taken together, these studies will reveal a key, universal and conserved process at the heart of ERAD involved in managing cell stress and a variety of clinical maladies. My studies in yeast will provide a new fundamental knowledge of the retrotranslocation process of ERAD. ERAD has been implicated in diseases such as aging, Alzheimer's disease, Huntington's disease, Parkinson's disease and in normal sterol regulation, my studies are pertinent for understanding how defects in ERAD are associated with these processes and maladies.