Bioactive and bioorthogonal molecular tools for studying host-pathogen interactions

用于研究宿主-病原体相互作用的生物活性和生物正交分子工具

• 批准号: RGPIN-2016-05573
• 负责人: Pezacki, JohnPaul
• 金额: $ 7.87万
• 依托单位: University of Ottawa
• 依托单位国家: 加拿大
• 项目类别: Discovery Grants Program - Individual
• 财政年份: 2016
• 资助国家: 加拿大
• 起止时间: 2016-01-01 至 2017-12-31
• 项目状态: 已结题
• 来源: https://www.nserc-crsng.gc.ca/ase-oro/Details-Detailles_eng.asp?id=615777
• 关键词: Bioactive; bioorthogonal; molecular; tools; studying

We will pursue three specific research themes within this proposed NSERC Discovery Grant program. First, we will develop activity-based protein profiling tools to investigate changes in enzyme activity. Activity-based protein profiling (ABPP) is a chemical approach for the characterization of enzymatic function within the complex environment of whole cell proteomes or living cells. This involves the use of active site-directed chemical probes that report on enzyme activity. We will design, synthesize and characterize new activity-based probes, with a special focus on lipid kinases, and related enzymes that control and alter membrane microenvironments. We will also develop new bioorthogonal chemistry to allow the modification and tracking of living pathogens, with an emphasis on methods that allow molecular tracking. This will be accomplished by the incorporation of non-natural chemical groups that can be used to interrogate specific pathogenic biomolecules. Bioorthogonal reactions involving nitrone-alkyne cycloadditions will be further developed to optimize reactivity in biologically relevant environments that promote efficient bioconjugation reactions for in vivo applications. This will involve the synthesis and evaluation of new molecules, reactions, and in some cases expansion of the genetic code for site-specific incorporation of bioorthogonal reactivity within target proteins. Lastly, we will develop new methodologies for understanding the roles of microRNAs (miRNA). miRNAs are endogenous non-coding RNAs that regulate messenger RNA stability and translation. However, identification of the mRNA targets that they regulate in vivo remains a challenge to the field. Although traditional miRNA profiling studies have proven instrumental in identifying biomarkers for disease, these studies typically provide no clear indication of the functional impact and pathological relevance of differentially expressed miRNAs. In this research program we will focus on the development of new methods to identify miRNA function. We will use pathway-specific small molecules known to target cellular pathways in order to annotate miRNAs associated with them, identifying function, and potential synergies between small molecules and non-coding RNAs. These fundamental studies will then enable further analysis of these pathways as they may pertain to the regulation of pathogen-host interactions. This discovery grant program will continue ongoing work in the creation of new chemical biology tools for applications in natural and health sciences. Furthermore, this grant will allow my laboratory to continue its development of talented and multidisciplinary researchers that represent the next generation of Canadian scientists. These highly qualified personnel will contribute to Canada’s future competitiveness in science, technology, and our knowledge-driven Canadian economy.

我们将在拟议的NSERC发现资助计划中追求三个具体的研究主题。首先，我们将开发基于活性的蛋白质分析工具来研究酶活性的变化。基于活性的蛋白质谱分析（ABPP）是一种在全细胞蛋白质组或活细胞的复杂环境中表征酶功能的化学方法。这包括使用活性位点导向的化学探针来报告酶的活性。我们将设计，合成和表征新的基于活性的探针，特别关注脂质激酶，以及控制和改变膜微环境的相关酶。我们还将开发新的生物正交化学，以允许修饰和跟踪活病原体，重点是允许分子跟踪的方法。这将通过结合非天然化学基团来完成，这些化学基团可用于询问特定的致病生物分子。涉及硝基-炔环加成的生物正交反应将进一步发展，以优化生物相关环境中的反应性，从而促进有效的生物偶联反应在体内的应用。这将涉及新分子、反应的合成和评价，以及在某些情况下扩展基因密码，以便在靶蛋白内特异性结合生物正交反应性。最后，我们将开发新的方法来理解microrna （miRNA）的作用。mirna是调节信使RNA稳定性和翻译的内源性非编码RNA。然而，鉴定它们在体内调节的mRNA靶标仍然是该领域的一个挑战。尽管传统的miRNA分析研究已被证明有助于识别疾病的生物标志物，但这些研究通常没有提供差异表达miRNA的功能影响和病理相关性的明确指示。在本研究项目中，我们将专注于开发鉴定miRNA功能的新方法。我们将使用已知的靶向细胞通路的通路特异性小分子来注释与它们相关的mirna，识别功能，以及小分子和非编码rna之间的潜在协同作用。这些基础研究将使进一步分析这些途径成为可能，因为它们可能与病原体-宿主相互作用的调节有关。