Bayesian Methods for Latent Class Models

潜在类模型的贝叶斯方法

• 批准号: RGPIN-2018-06193
• 负责人: Dendukuri, Nandini
• 金额: $ 1.17万
• 依托单位: McGill University
• 依托单位国家: 加拿大
• 项目类别: Discovery Grants Program - Individual
• 财政年份: 2018
• 资助国家: 加拿大
• 起止时间: 2018-01-01 至 2019-12-31
• 项目状态: 已结题
• 来源: https://www.nserc-crsng.gc.ca/ase-oro/Details-Detailles_eng.asp?id=648996
• 关键词: Bayesian; Methods; Latent; Class; Models

My research program is focused on the development of Bayesian methods for estimation of latent class models. These models are motivated by problems involving diagnostic tests for diseases or conditions for which no perfect test exists. This is the case for many common diseases e.g. pneumonia, tuberculosis in children, prostate cancer. The lack of a perfect test presents a methodological challenge to researchers interested in measuring the prevalence of the disease or in the evaluating diagnostic tests for the disease. The current proposal describes new methods for such studies that will be developed under three different themes: ******i) Methods for latent class analysis in the context of a single study: ***Under this theme, we will study methods for comparing competing latent class models, methods for estimating the incremental value of a new test and methods for determining the optimal sequence of tests to be used in practice.******ii) Methods for evaluating the sample size required for evaluating diagnostic tests: ***Under this theme, we will describe methods for designing a new study where the incremental value of a new test over an older test is the statistic of interest. We will also develop methods for designing studies where the outcome of interest is reliability rather than validity.******iii) Methods for modeling conditional dependence and measuring heterogeneity in latent class meta-analysis models: ***Under this theme, we will describe methods for modeling conditional dependence in the context of a meta-analysis and methods for reporting the between-study heterogeneity in a meta-analysis.******A Bayesian inferential framework will be used throughout. One particular advantage of this approach for the proposed research is that it can be used for estimation of the non-identifiable models that frequently arise when the number of observed, imperfect tests is small (less than three or four). In such cases, the observed data needs to be augmented with prior information on a subset of the unknown parameters (e.g. the sensitivity and specificity of a well established but imperfect diagnostic test). Further, the Bayesian approach is conceptually straightforward to apply to the complex models that will arise under the above themes. ******Implementation of the Bayesian methods will involve use of Monte Carlo Markov Chain methods. Traditionally, an important impediment in disseminating Bayesian methods has been the lack of software. Therefore, user-friendly software will be developed to accompany each of the proposed methods. Each theme will give rise to several sub-projects suitable for graduate students or post-doctoral fellows. The methods described here will also find application in other areas where mis-measured data arise.

我的研究项目重点是开发用于估计潜在类模型的贝叶斯方法。这些模型的动机是涉及对不存在完美测试的疾病或病症的诊断测试的问题。许多常见疾病都是如此，例如：肺炎、儿童结核病、前列腺癌。缺乏完美的测试对有兴趣测量该疾病的患病率或评估该疾病的诊断测试的研究人员提出了方法学上的挑战。目前的提案描述了此类研究的新方法，这些方法将在三个不同的主题下开发： ******i) 在单一研究的背景下进行潜在类别分析的方法：***在这个主题下，我们将研究比较竞争潜在类别模型的方法、估计新测试增量值的方法以及确定实践中使用的最佳测试序列的方法。********ii) 评估评估所需样本量的方法 诊断测试：***在这个主题下，我们将描述设计一项新研究的方法，其中新测试相对于旧测试的增量值是感兴趣的统计量。我们还将开发设计研究的方法，其中感兴趣的结果是可靠性而不是有效性。******iii) 在潜在类别荟萃分析模型中建模条件依赖性和测量异质性的方法：***在此主题下，我们将描述在荟萃分析背景下建模条件依赖性的方法以及在荟萃分析中报告研究间异质性的方法。 荟萃分析。*****贝叶斯推理框架将贯穿始终。这种方法对于所提出的研究的一个特殊优点是，它可以用于估计不可识别的模型，当观察到的、不完美的测试数量很少（少于三或四个）时，这种模型经常出现。在这种情况下，需要用有关未知参数子集的先验信息（例如，完善但不完善的诊断测试的敏感性和特异性）来增强观察到的数据。此外，贝叶斯方法在概念上很简单，可以直接应用于上述主题下出现的复杂模型。 ******贝叶斯方法的实现将涉及蒙特卡罗马尔可夫链方法的使用。传统上，传播贝叶斯方法的一个重要障碍是缺乏软件。因此，将开发用户友好的软件来配合所提出的每种方法。每个主题都会产生几个适合研究生或博士后的子项目。这里描述的方法也适用于出现错误测量数据的其他领域。