Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.

Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.
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DOI:
10.1270/jsbbs.64.264
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发表时间:
2014-09
期刊:
影响因子:
2.4
通讯作者:
Hirakawa H
Hirakawa H
中科院分区:
农林科学3区
文献类型:
--
作者:
Shirasawa K;Isobe S;Tabata S;Hirakawa H

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为了提供有用的农艺植物基因组信息,我们建立了一个数据库,Kazusa标记数据库(marker.kazusa.or.jp)。该数据库包括关于DNA标记的信息,例如,SSR和SNP标记、遗传连锁图谱和物理图谱,由Kazusa DNA研究所开发。标记的关键字搜索,用于标记开发的序列数据和实验条件也可通过该数据库获得。目前,有10种植物被列为目标:番茄(Solanum lycopersicum)、辣椒(Capsicum annuum)、草莓(Fragaria × ananassa)、萝卜(Raphanus sativus)、莲藕、大豆(Glycine max)、花生(Arachis hypogaea)、红三叶草(Trifolium pratense)、白三叶草(Trifolium repens)和桉树(Eucalyptus camaldulensis)。此外,随着我们的研究进展,该数据库中登记的植物物种数量将增加。Kazusa标记数据库将成为基础科学和应用科学的有用工具,如基因组学,遗传学和作物分子育种。
In order to provide useful genomic information for agronomical plants, we have established a database, the Kazusa Marker DataBase (http://marker.kazusa.or.jp). This database includes information on DNA markers, e.g., SSR and SNP markers, genetic linkage maps, and physical maps, that were developed at the Kazusa DNA Research Institute. Keyword searches for the markers, sequence data used for marker development, and experimental conditions are also available through this database. Currently, 10 plant species have been targeted: tomato (Solanum lycopersicum), pepper (Capsicum annuum), strawberry (Fragaria × ananassa), radish (Raphanus sativus), Lotus japonicus, soybean (Glycine max), peanut (Arachis hypogaea), red clover (Trifolium pratense), white clover (Trifolium repens), and eucalyptus (Eucalyptus camaldulensis). In addition, the number of plant species registered in this database will be increased as our research progresses. The Kazusa Marker DataBase will be a useful tool for both basic and applied sciences, such as genomics, genetics, and molecular breeding in crops.
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