Molecular-reorientational dynamics investigation of biomolecules in solution by NMR, X-ray and CSI-MS.
Molecular-reorientational dynamics investigation of biomolecules in solution by NMR, X-ray and CSI-MS.
批准号:
16590002
负责人:
SEKI Hiroko
金额:
$1.6万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2004
资助国家:
日本
项目状态:
已结题
起止时间:
2004 至 2006
中文摘要
I.用PFG核磁共振、CSI-MS和X-射线单晶分析对甾体化合物在稀溶液中和固体中的氢键进行了广泛的分析。虽然结晶状态下的X射线分析和溶液中的CSI-MS测量表明,观察到的甾体化合物的扩散系数D_<;obs>;可能会随着氢键数目的不同而变化,但从扩散研究中确定的实际观察到的D_<;obs>;值不断减小,与氢键数目的减少没有相关性。明确地证实了基于甾体化合物分子间氢键的链状结构(簇)的形成。II.为了证实这一在溶液中前所未有的现象,我们用PFG核磁共振进行了扩散研究。由PFG核磁共振测量得到了BG+NBA(n=1~4)的D值,包括BG和BA本身。观察到的D值随着附着的BA(N)数目的增加而减小。这一结果清楚地支持了CSI-MS观察到的配合物在溶液中的有序形成。III.发现^<;19>;F{1H}NOE和2D^1H-lt;-19>;F HOESY实验检测到氟烷^<;19>;F与HSA质子之间存在分子间的NOE。用~1H和~(19)>;F核磁共振测定了氟烷的扩散系数,表明氟烷与人血清白蛋白相互作用。这些结果表明,这些技术非常适合于在药物发现过程中识别与蛋白质受体结合的含氟配体。IV.基于差分扩散的核磁共振技术可以使用简单的脉冲序列直接从络合物中检测配体信号,而不需要同位素标记。目前的结果表明,这些技术非常适合于在药物发现过程中识别与蛋白质受体结合的配体。
英文摘要
I. An extensive analysis of hydrogen bonding of steroid compounds in diluted solution is preformed by PFG NMR, CSI-MS and in the solid state by X-ray crystallographic analysis. Although X-ray analysis in the crystalline state and CSI-MS measurement in solution suggested that the observed diffusion coefficient D_<obs> of the steroid compounds may vary in accordance with the number of hydrogen bonds, the actual observed D_<obs> value determined from the diffusion studies diminished constantly without correlation on the decreasing numbers of hydrogen bonds. Formation of a chain structure (cluster) based on intermolecular hydrogen bonding of the steroid compounds is unambiguously confirmed.II. To confirm this unprecedented phenomenon in solution, we performed diffusion study by PFG NMR. The D values of the complexes BG + nBA (n=1〜4) including BG and BA itself, obtained by PFG NMR measurements. The observed D value decreases in accordance with the increasing number of attached BA (n). This result clearly supports the ordered formation of the complexes in solution as observed by CSI-MS.III. It was found that ^<19>F{^1H} NOE and 2D ^1H-<-19>F HOESY experiments detected intermolecular NOEs between halothane ^<19>F and HSA protons. Measurements of diffusion coefficients for halothane were also carried out by ^1H and ^<19>F NMR, indicating the interaction of halothane with HSA. The present results indicate that these techniques are very suitable for identification of a fluorine containing ligand binding with a protein receptor in the drug discovery process.IV. The difference diffusion-based NMR technique can directly detect the ligand signals from the complex using a simple pulse sequence without the need for isotope labeling. The present results indicate that these techniques are very suitable for identifying a ligand binding with a protein receptor in the drug discovery process.
期刊论文(60)
专著(0)
科研奖励(0)
会议论文
登录
查看更多内容
Application of the ^19F NMR Technique to Observe Binding of the General Anesthetic Halothane to Human Serum Albumin
应用^19F NMR技术观察全身麻醉药氟烷与人血清白蛋白的结合
DOI:
10.2116/analsci.20.1475
发表时间:
2004
期刊:
Analytical Sciences
影响因子:
1.6
作者:
[Kazuaki Shikii, S. Sakurai, H. Utsumi, H. Seki, M. Tashiro]
通讯作者:
M. Tashiro
Identification of 2-(cysteinyl)amido-2-deoxy-D-galacturonic acidresidue from the sheath of Leptothrix cholodnii
科氏细毛菌鞘中2-(半胱氨酰)酰胺基-2-脱氧-D-半乳糖醛酸残基的鉴定
DOI:
--
发表时间:
2006
期刊:
Biosci.Biotech.& Biochem 70
影响因子:
--
作者:
[Makita, H., Nakahara, Y., Fukui, H., Miyanoiri, Y., Katahira, M., Seki, H., Takeda, M.and Koizumi, J.]
通讯作者:
J.
DOI:
10.1246/cl.2006.1400
发表时间:
2006-11
期刊:
Chemistry Letters
影响因子:
1.6
作者:
[M. Nakakoshi;M. Shiro;T. Fujimoto;T. Machinami;H. Seki;M. Tashiro;K. Nishikawa]
通讯作者:
M. Nakakoshi;M. Shiro;T. Fujimoto;T. Machinami;H. Seki;M. Tashiro;K. Nishikawa
DOI:
10.1016/j.cplett.2006.06.052
发表时间:
2006-08-18
期刊:
CHEMICAL PHYSICS LETTERS
影响因子:
2.8
作者:
[Nakakoshi, Masamichi, Ishihara, Shinji, Nishikawa, Keiko]
通讯作者:
Nishikawa, Keiko
Absolute Ordered Cluster Formation of an o-Bisguanidinobenzene-Benzoic Acid Complexes
邻双胍基苯-苯甲酸配合物的绝对有序簇形成
DOI:
--
发表时间:
2006
期刊:
Chem. Pharm. Bull., 54(1)
影响因子:
--
作者:
[Yoshiyuld Hari, Tomoki Kanie, Toyohiko Aoyama, K.Kawahata]
通讯作者:
K.Kawahata
共 16 条
Structural analysis and dynamics of oligosaccharides by NMR Spectroscopy and Mass Spectrometry
-
批准号:22590001
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.91万
-
财政年份:2010
-
负责人:SEKI Hiroko
-
依托单位:
Molecular Structure Analysis on the Interactive Relations of Functionalized Compounds with NMR in Solution and Solid States
-
批准号:19590002
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$3.0万
-
财政年份:2007
-
负责人:SEKI Hiroko
-
依托单位:
Structural investigation of aggregates in various functional complexes, polymers and biomolecules hi solution by using PFG-NMR analysis.
-
批准号:14571995
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$1.15万
-
财政年份:2002
-
负责人:SEKI Hiroko
-
依托单位:
国内基金
海外基金
登录
查看更多内容
带drift-diffusion项的抛物型偏微分方程组的能控性与能稳性
-
批准号:61573012
-
项目类别:面上项目
-
资助金额:49.0万元
-
批准年份:2015
-
负责人:张亮
-
依托单位:
Levy过程驱动的随机Fast-Diffusion方程的Harnack不等式及其应用
-
批准号:11126079
-
项目类别:数学天元基金项目
-
资助金额:3.0万元
-
批准年份:2011
-
负责人:周国立
-
依托单位:
基于非血流信号的脑功能成像技术与探测研究
-
批准号:81071149
-
项目类别:面上项目
-
资助金额:35.0万元
-
批准年份:2010
-
负责人:黄瑞旺
-
依托单位:
基于扩散磁共振成像脑白质纤维重建中的多纤维交叉问题研究
-
批准号:81000634
-
项目类别:青年科学基金项目
-
资助金额:20.0万元
-
批准年份:2010
-
负责人:左年明
-
依托单位:
半导体物理中的非线性偏微分方程组
-
批准号:10541001
-
项目类别:专项基金项目
-
资助金额:4.0万元
-
批准年份:2005
-
负责人:琚强昌
-
依托单位: