Development of safe non-uniform sampling processing method and its application into proteins
Development of safe non-uniform sampling processing method and its application into proteins
批准号:
22770106
负责人:
JEE Jungoo
金额:
$2.75万
依托单位国家:
日本
项目类别:
Grant-in-Aid for Young Scientists (B)
财政年份:
2010
资助国家:
日本
项目状态:
已结题
起止时间:
2010 至 2011
中文摘要
本研究的目的是建立一个多维核磁共振中非均匀采样(NUS)的综合工具,以挑战传统核磁共振实验难以确定的蛋白质结构。本研究有两个方面的进展:(1)澄清了NUS光谱中的基线失真主要是由强峰引起的。通过将NUS和NOESY实验中没有产生对角峰的实验相结合,我们可以安全地将NUS方法应用到NOESY数据中。(2)通过修改CYANA来处理稀疏采样实验中的化学位移,我们可以确定蛋白质的结构,而不需要将稀疏采样数据重建为3D格式。
英文摘要
The aim of this study is to establish an integrated tool for non-uniform sampling(NUS) in multidimensional NMR for challenging the structures of proteins that are difficult to be determined with conventional NMR experiments. In this study, there were two advances.(1) We clarified that the distorted baselines in NUS spectra are mainly caused by strong peaks. By combining NUS and experiments that do not yield diagonal peaks in NOESY experiments, we could safely apply NUS method into NOESY data.(2) By modifying CYANA to handle with the chemical shifts in sparse sampling experiments, we could determine the structure of proteins without reconstructing the sparsely sampled data into 3D format.
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DOI:
10.1093/jb/mvq097
发表时间:
2010-10
期刊:
Journal of biochemistry
影响因子:
2.7
作者:
[A. Sato;M. Mishima;A. Nagai;Sun-Yong Kim;Yutaka Ito;T. Hakoshima;J. Jee;K. Kitano]
通讯作者:
A. Sato;M. Mishima;A. Nagai;Sun-Yong Kim;Yutaka Ito;T. Hakoshima;J. Jee;K. Kitano
DOI:
10.1073/pnas.1014898107
发表时间:
2011-04-26
期刊:
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
影响因子:
11.1
作者:
[Kim, Kyungmin, Khayrutdinov, Bulat I., Jeon, Young Ho]
通讯作者:
Jeon, Young Ho
DOI:
10.1186/1476-4598-9-36
发表时间:
2010-02-11
期刊:
MOLECULAR CANCER
影响因子:
37.3
作者:
[Kim, Byung-Hak, Jee, Jun-Goo, Baeg, Gyeong-Hun]
通讯作者:
Baeg, Gyeong-Hun
DOI:
10.1007/s10858-011-9502-8
发表时间:
2011-06-01
期刊:
JOURNAL OF BIOMOLECULAR NMR
影响因子:
2.7
作者:
[Ikeya, Teppei, Jee, Jun-Goo, Guentert, Peter]
通讯作者:
Guentert, Peter
海外基金