Understanding an ancient universal membrane effector system
Understanding an ancient universal membrane effector system
批准号:
BB/X003035/1
负责人:
Gavin Thomas
金额:
$564.72万
依托单位:
依托单位国家:
英国
项目类别:
Research Grant
财政年份:
2022
资助国家:
英国
项目状态:
未结题
起止时间:
2022 至 --
中文摘要
所有的活细胞都被一层薄膜所包围,这层薄膜将细胞内部与外部环境隔开。这个基本的细胞边界层包含蛋白质,允许细胞摄取食物并排出废物。细胞膜也被激活,这意味着细胞主动产生并维持跨膜的离子梯度和电压。这种所谓的电化学梯度是储存能量的关键细胞方法之一,可用于驱动营养素的吸收和排出废物。此外,电化学梯度对于ATP的合成至关重要,ATP是用于为细胞内过程提供能量的关键分子。因此,膜的完整性是活细胞正常功能的核心,许多已知的毒素包括一些抗生素通过破坏膜起作用。在细胞的早期进化过程中,进化出一种名为IM30的蛋白质,它在存在破坏性物质的情况下具有保护膜的作用。这些蛋白质是在30多年前发现的,它们具有环状结构,可以相互堆叠形成管状结构。此外,已知这些蛋白质在细胞膜受损时在细胞中积累到非常高的水平,并直接结合到细胞膜上。然而,它们如何保护膜,使电化学势得以维持,是未知的。在这个项目中,我们组建了一支多元化的研究团队,他们处于职业生涯的不同阶段,拥有不同的专业知识。我们都有兴趣试图弄清楚IM30蛋白如何保护细胞膜。它们可以通过形成覆盖膜内部的涂层,形成包裹细胞并将膜保持在一起的“肋骨”,或者通过允许膜形成携带破坏细胞的毒素的小碎片来实现这一点。或者,他们可能会专门投射产生电化学势的蛋白质,或者用它来制造ATP。目前,我们根本不知道。然而,无论机制是什么,它都将是一个全新的机制,并告诉我们有关生物膜如何组织和功能的重要基本信息。为了弄清楚这些蛋白质的功能,我们将使用大量不同的微生物物种,因为这些代表了我们可以有效研究的相对简单的细胞,并且我们知道IM30很重要。我们将系统地研究不同细胞含有多少蛋白质,蛋白质在细胞中的位置,它们是否在细胞内组装成环和杆,以及它们的功能如何受到其他因素的调节。我们将开发新技术来测量活细胞中真实的电化学梯度,这将为我们研究IM30蛋白保护细胞膜的机制提供必要的工具。我们的团队由来自英国5所不同大学的微生物学家、生物化学家、遗传学家和细胞生物学家组成,他们将共同努力,为理解IM30蛋白功能带来一个飞跃,更广泛地说,细胞如何保护自己免受环境的侵害。
英文摘要
All living cells are surrounded by a thin membrane, which keeps the inside of the cell separate from the outside environment. This essential cellular boundary layer contains proteins that allow the cell to take up food and expel waste products. The membrane is also energised, which means that cells actively generate and maintain ion gradients and voltage across the membrane. This so-called electrochemical gradient is one of the key cellular methods to store energy, and which can be utilised to drive uptake of nutrients and expel waste products. Furthermore, electrochemical gradient is critical for the synthesis of ATP, which is a key molecule used to energise intracellular processes. Hence, the integrity of the membrane is central to the proper function of living cells, and many known toxins including some antibiotics act by disrupting the membrane. During the early evolution of cells, a protein named IM30 evolved that has a role in protecting the membrane in the presence of damaging agents. These proteins, discovered just over 30 year ago, have been found to adopt ring-like structures that can stack upon each other to form tubes. Further, these proteins are known to accumulate in cells to very high levels when their membrane is damaged, and directly bind to cell membranes. However, how they protect the membrane, allowing the electrochemical potential to be maintained, is unknown. In this project we have assembled a diverse team of researchers at different stages in their career and with different sets of expertise. We all share the interest in trying to figure out how the IM30 proteins work to protect cellular membranes. They could potentially do this by forming a coat covering the inside of the membrane, by forming 'ribs' that wrap around the cell and hold the membrane together, or by allowing the membranes to form small fragments that carry away the toxin that is damaging the cell. Alternatively, they might specifically project the proteins that generate the electrochemical potential or use it make ATP. Currently, we simply do not know. Whatever the mechanism is, however, it will be a completely new one and tell us important fundamental information about how biological membranes are organised and function. To figure out how these proteins function, we will use a large number of different microbial species, as these represent relatively simple cells that we can study effectively, and where we know IM30s are important. We will systematically characterise how much of the protein different cells contain, where in the cells the proteins a localised, whether they assemble into rings and rods inside the cell, and how their function is regulated by other factors. We will develop new techniques to measure the electrochemical gradient in real time in living cells, which will provide us with essential tools to study the mechanisms through which IM30 proteins protect cell membranes. Our team comprises of microbiologists, biophysicist, biochemists, geneticists and cell biologists at 5 different Universities in the UK, who will come together to bring about a step change in understanding of IM30 protein function, and more generally how cells protect themselves from environmental insult.
期刊论文(4)
专著(0)
科研奖励(0)
会议论文
Interrogation of RNA-protein interaction dynamics in bacterial growth
细菌生长中 RNA-蛋白质相互作用动力学的探究
DOI:
10.1101/2023.07.03.547468
发表时间:
2023
期刊:
影响因子:
--
作者:
[Monti M]
通讯作者:
Monti M
DOI:
10.1099/mic.0.001412
发表时间:
2023-11
期刊:
MICROBIOLOGY-SGM
影响因子:
2.8
作者:
[Elston, Rory, Mulligan, Christopher, Thomas, Gavin H.]
通讯作者:
Thomas, Gavin H.
DOI:
10.1073/pnas.2305393120
发表时间:
2023-08-15
期刊:
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
影响因子:
11.1
作者:
[Ernits, Karin, Saha, Chayan Kumar, Brodiazhenko, Tetiana, Chouhan, Bhanu, Shenoy, Aditi, Buttress, Jessica A., Duque-Pedraza, Julian J., Bojar, Veda, Nakamoto, Jose A., Kurata, Tatsuaki, Egorov, Artyom A., Shyrokova, Lena, Johansson, Marcus J. O., Mets, Toomas, Rustamova, Aytan, Dzigurski, Jelisaveta, Tenson, Tanel, Garcia-Pino, Abel, Strahl, Henrik, Elofsson, Arne, Hauryliuk, Vasili, Atkinson, Gemma C.]
通讯作者:
Atkinson, Gemma C.
Evolutionary routes to phenotypic convergence in vertebrates
-
批准号:NE/Z000149/1
-
项目类别:Research Grant
-
资助金额:$91.0万
-
财政年份:2024
-
负责人:Gavin Thomas
-
依托单位:
Role of ecological and evolutionary processes in structuring global river bird assemblages
-
批准号:EP/Y010612/1
-
项目类别:Fellowship
-
资助金额:$25.55万
-
财政年份:2023
-
负责人:Gavin Thomas
-
依托单位:
The macroevolutionary consequences of trait correlations
-
批准号:NE/T000139/1
-
项目类别:Research Grant
-
资助金额:$60.7万
-
财政年份:2020
-
负责人:Gavin Thomas
-
依托单位:
DETOXbase: an online tool to explore host cell stress responses in industrial biotechnology processes
-
批准号:BB/T010061/1
-
项目类别:Research Grant
-
资助金额:$1.23万
-
财政年份:2019
-
负责人:Gavin Thomas
-
依托单位:
Taiwan Partnering Award: Understanding the structure & function of bacterial transporters important for industrial biotechnology and bioenergy
-
批准号:BB/P025722/1
-
项目类别:Research Grant
-
资助金额:$3.22万
-
财政年份:2017
-
负责人:Gavin Thomas
-
依托单位:
Bacterial transport and catabolism of human malodour precursors
-
批准号:BB/N006615/1
-
项目类别:Research Grant
-
资助金额:$41.31万
-
财政年份:2016
-
负责人:Gavin Thomas
-
依托单位:
A genomic pipeline for annotation of carbohydrates active transporters (CATs) for industrial biotechnology and bioenergy
-
批准号:BB/P000177/1
-
项目类别:Research Grant
-
资助金额:$0.45万
-
财政年份:2016
-
负责人:Gavin Thomas
-
依托单位:
13TSB_CRD - Flexible Engineered Solutions for Xylose Metabolism Using Synthetic Biology (FLEX)
-
批准号:BB/L011522/1
-
项目类别:Research Grant
-
资助金额:$14.1万
-
财政年份:2013
-
负责人:Gavin Thomas
-
依托单位:
Biotic interactions and the generation and organisation of biodiversity
-
批准号:NE/G012938/2
-
项目类别:Fellowship
-
资助金额:$5.67万
-
财政年份:2012
-
负责人:Gavin Thomas
-
依托单位:
Biotic interactions and the generation and organisation of biodiversity
-
批准号:NE/G012938/1
-
项目类别:Fellowship
-
资助金额:$30.18万
-
财政年份:2010
-
负责人:Gavin Thomas
-
依托单位:
Systems level analysis of animal metabolism by multicompartmental graph- and constraints-based modelling
-
批准号:BB/F005342/1
-
项目类别:Research Grant
-
资助金额:$51.26万
-
财政年份:2008
-
负责人:Gavin Thomas
-
依托单位:
Characterisation of the function and mechanism of a binding-protein dependent secondary transporter
-
批准号:BB/F014759/1
-
项目类别:Research Grant
-
资助金额:$47.75万
-
财政年份:2008
-
负责人:Gavin Thomas
-
依托单位:
海外基金