Single Cell Genomics Core
Single Cell Genomics Core
批准号:
10663283
负责人:
MICHAEL L WHITFIELD
金额:
$31.87万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2019
资助国家:
美国
项目状态:
已结题
起止时间:
2019-08-01 至 2024-06-30
关键词:
Antibiotic ResistanceAutoimmune DiseasesAutoimmunityBar CodesBioinformaticsBiologicalBiological ProcessBiological SciencesBiologyCancer BiologyCell SeparationCellsCenters of Research ExcellenceChemistryChromiumChronobiologyClinicalCollaborationsCommunicationCommunitiesComputer softwareConsultationsCutaneous MelanomaDNA sequencingDataData AnalysesDatabasesDevelopmentDisciplineDiseaseDissociationEducational process of instructingEducational workshopEnsureEquipmentEventExperimental DesignsFoundationsFundingGene ExpressionGenerationsGenomicsGoalsGrantHealthHeterogeneityHuman ResourcesImmuneImmune responseImmune systemImmunologyImmunotherapyIndividualInternationalInternetLaboratoriesLeadershipLibrariesLinkMalignant NeoplasmsManagement Information SystemsMentorsMethodologyMethodsMolecularNerve DegenerationNucleic AcidsOrganismPatientsPhenotypePopulationPreparationPrivatizationProceduresProcessProteomicsProtocols documentationPublishingQuality ControlRNAReproducibilityResearchResearch PersonnelResistanceResourcesSamplingServicesSkinStandardizationSystemSystemic SclerodermaTechnologyTimeTissuesTranslatingUnited States National Institutes of HealthVideoconferencingVisualizationWhole OrganismWorkbasebody systemcell typeclinically relevantcomplex biological systemscomputer infrastructuredata analysis pipelinedata pipelinedata qualitydesigndigitalepigenomeexperienceexperimental studyimprovedinnovationinsightmachine learning modelmathematical modelmeetingsmetabolomicsoutcome predictionprotocol developmentsingle-cell RNA sequencingsuccesstherapy resistanttooltranscriptome sequencingtumortumor progression
中文摘要
核心C:单细胞基因组学(SCG)核心
摘要
高通量基因组学、蛋白质组学、代谢组学和免疫分析技术现在
提供了丰富的数据,可以挖掘询问基本的生物过程,
细胞或有机体群体,以及疾病的分子基础,水平从
整个生物体到单个细胞。这些数据的生成和分析现在是
生命科学的研究方法和问题。定量生物学中心
(CQB)将首先形成核,然后发展这种融合湿台“组学研究”与
达特茅斯的生物信息学单细胞基因组学(SCG)已成为一种重要的工具,
了解涉及复杂生物系统的疾病,包括癌症,神经退行性疾病,
和免疫/自身免疫性疾病。SCG核心的总体目标是开发一个集中的
CQB内部的资源,以支持个人项目负责人和达特茅斯社区。的
该核心的目标是实施、维护和改进执行所需的技术
SCG实验以严格和质量控制的方式进行。SCG核心将直接
与COBRE领导层、项目负责人、导师和研究人员一起设计强大的实验
并将实施严格的质量控制和样本跟踪方法(目标1),以确保
生成高质量、可再现的数据。SCG核心还将维护设备,
专业知识,使分离,捕获,文库制备和测序的DNA和RNA从
为COBRE研究人员和达特茅斯研究团体提供单细胞(目标2)。
最后,与分析核心(核心B)合作,SCG核心将提供
计算基础设施和专业知识来分析和可视化这些单细胞数据,
加快从实验设计到生物学洞察的过程(目标3)。SCG核心将
与该领域的进步保持同步,作为专业知识和技术的中心,
全校范围内的调查员
英文摘要
Core C: Single Cell Genomics (SCG) Core
ABSTRACT
High-throughput genomic, proteomic, metabolomic, and immune profiling technologies now
provide a wealth of data that can be mined to interrogate basic biological process, changes in
cellular or organismal populations, and the molecular bases of disease, at levels ranging from the
whole organism to single cells. The generation and analysis of such data is now a pillar of
research approaches and problems in the life sciences. The Center for Quantitative Biology
(CQB) will first nucleate and then grow this fusion of wet bench “omics research” with
bioinformatics at Dartmouth. Single Cell Genomics (SCG) has become an essential tool to
understand diseases involving complex biological systems including cancer, neurodegenerative
and immune/autoimmune diseases. The overall goal of the SCG core is to develop a centralized
resource within the CQB to support individual project leaders and the Dartmouth community. The
goal of this core is to implement, maintain and improve upon the technologies required to conduct
SCG experiments in a rigorous and quality controlled manner. The SCG Core will work directly
with COBRE leadership, project leaders, mentors and investigators to design robust experiments
and will implement stringent quality control and sample tracking methodologies (Aim 1) to ensure
generation of high quality, reproducible data. The SCG core will also maintain equipment and
expertise to enable isolation, capture, library preparation and sequencing of DNA and RNA from
single cells for COBRE investigators and the Dartmouth research community at large (Aim 2).
Finally, in collaboration with the Analytics Core (Core B), the SCG Core will provide the
computational infrastructure and expertise to analyze and visualize these single cell data,
expediting the process from experimental design to biological insight (Aim 3). The SCG core will
stay abreast of advancements in the field, serving as a hub of expertise and technology to
investigators campus-wide.
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专著(0)
科研奖励(0)
会议论文
Center for Quantitative Biology Administrative Core
-
批准号:10434070
-
项目类别:
-
资助金额:$20.25万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology: A focus on "omics", from organisms to single cells Supplement 2
-
批准号:10853928
-
项目类别:
-
资助金额:$77.13万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology: A focus on "omics", from organisms to single cells
-
批准号:10212411
-
项目类别:
-
资助金额:$244.42万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology Administrative Core
-
批准号:10212412
-
项目类别:
-
资助金额:$69.11万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology Administrative Core
-
批准号:10663279
-
项目类别:
-
资助金额:$39.0万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
SARS-CoV-2 Surveillance Studies and Genome Sequencing in Rural New England
-
批准号:10381159
-
项目类别:
-
资助金额:$81.26万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology: A focus on "omics", from organisms to single cells
-
批准号:10434069
-
项目类别:
-
资助金额:$244.42万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
NOSI cloud computing Supplement
-
批准号:10827318
-
项目类别:
-
资助金额:$24.53万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Enabling single molecule spatial transcriptomics with the Vizgen MERSCOPE in situ hybridization solution at Dartmouth and beyond
-
批准号:10581931
-
项目类别:
-
资助金额:$25.0万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology: A focus on "omics", from organisms to single cells
-
批准号:10663278
-
项目类别:
-
资助金额:$244.42万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Single Cell Genomics Core
-
批准号:10212414
-
项目类别:
-
资助金额:$35.0万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Center for Quantitative Biology: A focus on "omics", from organisms to single cells Supplement 1
-
批准号:10853913
-
项目类别:
-
资助金额:$139.32万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Single Cell Genomics Core
-
批准号:10434072
-
项目类别:
-
资助金额:$36.02万
-
财政年份:2019
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Core 3: Translational Genomics and Data Integration Core
-
批准号:10022106
-
项目类别:
-
资助金额:$16.15万
-
财政年份:2011
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Core 3: Translational Genomics and Data Integration Core
-
批准号:10262935
-
项目类别:
-
资助金额:$15.6万
-
财政年份:2011
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Development of RIP-Chip methods and tiled arrays to identify functional elements
-
批准号:7347325
-
项目类别:
-
资助金额:$36.0万
-
财政年份:2008
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Development of RIP-Chip methods and tiled arrays to identify functional elements
-
批准号:7618399
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项目类别:
-
资助金额:$37.08万
-
财政年份:2008
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Development of RIP-Chip methods and tiled arrays to identify functional elements
-
批准号:7825468
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项目类别:
-
资助金额:$37.81万
-
财政年份:2008
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Predicting and testing gene function in the human cell division cycle
-
批准号:7320850
-
项目类别:
-
资助金额:$31.37万
-
财政年份:2007
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
Predicting and testing gene function in the human cell division cycle
-
批准号:8069820
-
项目类别:
-
资助金额:$28.98万
-
财政年份:2007
-
负责人:MICHAEL L WHITFIELD
-
依托单位:
国内基金
海外基金
Autoimmune diseases therapies: variations on the microbiome in rheumatoid arthritis
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批准号:31171277
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项目类别:面上项目
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资助金额:60.0万元
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批准年份:2011
-
负责人:Christine Nardini
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依托单位: