Investigating chromatin-based mechanisms of astrocyte pathology during inflammation response and stress-induced behaviors
Investigating chromatin-based mechanisms of astrocyte pathology during inflammation response and stress-induced behaviors
批准号:
10246177
负责人:
Sasha Fulton
金额:
$1.0万
依托单位国家:
美国
项目类别:
财政年份:
2020
资助国家:
美国
项目状态:
已结题
起止时间:
2020-08-14 至 2021-08-23
关键词:
ATAC-seqAffectAffectiveAffinity ChromatographyAnhedoniaAnimalsAnxietyAstrocytesAutomobile DrivingAutopsyBacteriaBehaviorBehavioralBindingBinding SitesBiological AssayBrain regionCell NucleusCell physiologyCellsChIP-seqChromatinChromatin Remodeling FactorChronicClinicalComplexControl AnimalCoupledCultured CellsDNA-Binding ProteinsDataData SetDecision MakingDiseaseEpigenetic ProcessFellowshipFemaleFluorescenceFunctional disorderGene ExpressionGene TargetingGenesGeneticGenetic TranscriptionGenomic SegmentGoalsHumanInflammationInflammatoryInflammatory ResponseInvestigationLaboratoriesLaboratory ResearchLentivirus VectorMajor Depressive DisorderMeasuresMediatingMental disordersMentorshipMessenger RNAMethodsMolecularMorphologyMusNF-kappa BNeurogliaNeuronsNuclearPathogenicityPathologicPathologyPathway interactionsPhenotypePopulationPredispositionProcessProteinsRegulationRegulatory ElementResearch PersonnelRewardsRibosomesRodent ModelRoleSalineSignal TransductionSorting - Cell MovementStressSucroseSymptomsSystemTechniquesTestingTherapeuticTherapeutic AgentsTissuesTrainingTranscriptional RegulationTranslatingTransposaseUp-RegulationViral Vectorbasebehavioral phenotypingcareercell cortexcell typecellular transductionchromatin remodelingepigenetic regulationexperimental studygenetic regulatory proteingenome-wideinsightknock-downmalemolecular phenotypemouse modelneuroinflammationneurotransmissionnoveloverexpressionpre-clinicalpreferenceresponsesocialsocial defeatsocial stresstargeted treatmenttranscription factortranscriptome sequencingvector
中文摘要
虽然MDD主要是在神经元功能的背景下进行研究,但新出现的证据表明,
神经胶质细胞的失调可能同样重要,特别是在慢性神经炎症反应中,
压力,这是众所周知的,有助于MDD的病理生理学。然而,细胞类型特异性
驱动这些过程的转录动力学仍然不清楚,
可及性分析方法与细胞类型特定方法不兼容。我们的实验室最近
实施了新开发的技术FANS(荧光激活核分选)-耦合ATAC-
seq(转座酶可降解染色质测序试验),以分析细胞类型特异性调控蛋白
人类MDD中眶额皮层(OFC)的景观,OFC是一个处理基于奖励的决策的大脑区域,
导致并可能介导抑郁症的享乐缺失症状。有趣的是,我们只检测到MDD特异性开放
染色质区域(OCR)的神经胶质细胞,但不是神经元OFC细胞群。MDD的基因集分析-
特异性OCR显示调节NF-κ B炎症的星形胶质细胞特异性基因显著富集
反应使用基序发现,我鉴定了ZBTB7A,一种染色质重塑蛋白,
在MDD特异性OCR中显著过度表达的序列。最近,ZBTB7A被证明可以
协调染色质对延迟诱导NF-Kb靶基因的不同亚群的可及性,表明
ZBTB7A可能调节慢性NF-κ B应激信号从适应性向病理性的传导。我的飞行员
数据显示,ZBTB7A在人MDD的OFC和人MDD的OFC星形胶质细胞中上调,
临床前慢性社会失败应激(CSDS)小鼠模型以及培养的鼠原代星形胶质细胞中
用LPS(一种诱导NF-κ B和炎症的化合物)处理。根据这些初步数据,我
假设ZBTB7A在OFC星形胶质细胞中的上调作为促凋亡的致病驱动因素,
MDD中炎症性NF-Kb活化通过调节关键下游染色质可及性
靶基因,导致MDD相关的行为缺陷。在目标1中,我将描述基本机制
在基线和炎症应激期间,通过操纵ZBTB7A
在培养的人原代星形胶质细胞系统中的水平,然后用LPS或盐水处理,随后评估
星形胶质细胞反应性(IHC)、染色质可及性(通过ATAC-seq)、表观遗传调控(ChIP-seq)和基因
表达(RNA-seq)。在目的2中,我将探索通过使用新的靶向Zbtb7a的治疗潜力。
星形胶质细胞特异性病毒载体,以确定Zbtb7a在OFC中是否是必要的和足够的,以影响脆弱性
在社交失败压力的临床前小鼠模型中,炎症压力诱导的行为缺陷。一起
这些实验将提供巨大的潜力,为新的机制洞察疾病病理学,
在神经炎症和应激中,星形胶质细胞是一种研究相对不足的细胞类型。
英文摘要
Although MDD has been predominantly studied in the context of neuronal function, emerging evidence indicates
that dysregulation of glia may be equally important – particularly during chronic neuroinflammation in response
to stress, which is known to contribute to the pathophysiology of MDD. However, the cell-type specific
transcriptional dynamics driving these processes remain unclear because traditional epigenetic chromatin
accessibility profiling methods are not compatible with cell-type specific approaches. Our laboratory has recently
implemented the newly developed technique FANS (Fluorescence-Activated Nuclear Sorting)-coupled ATAC-
seq (Assay for Transposase-Accessible Chromatin-Sequencing) to profile the cell type-specific regulatory
landscape in human MDD in orbitofrontal cortex (OFC), a brain region that processes reward-based decision-
making and may mediate anhedonic symptoms in MDD. Interestingly, we only detected MDD-specific open
chromatin regions (OCRs) in the glial, but not the neuronal OFC cell population. Gene set analyses of MDD-
specific OCRs showed significant enrichment of astrocyte-specific genes regulating NF-KB inflammation
response. Using motif discovery, I identified ZBTB7A, a chromatin remodeling protein with recognition
sequences significantly overrepresented in MDD-specific OCRs. Recently, ZBTB7A has been shown to
orchestrate chromatin accessibility for a distinct subset of delayed induction NF-Kb target genes, suggesting that
ZBTB7A may regulate the transduction of chronic NF-Kb stress signals from adaptive to pathological. My pilot
data has shown that ZBTB7A is upregulated in the OFC of both human MDD and in OFC astrocytes of a
preclinical chronic social defeat stress (CSDS) mouse model, as well as in cultured murine primary astrocytes
treated with LPS (a compound which induces NF-KB and inflammation). Given these preliminary data, I
hypothesize that upregulation of ZBTB7A in OFC astrocytes acts as a pathogenic driver of pro-
inflammatory NF-Kb activation in MDD through modulation of chromatin accessibility at key downstream
target genes, leading to MDD-related behavioral deficits. In Aim 1, I will characterize the basic mechanisms
of manipulating this chromatin remodeler at baseline and during inflammation stress by manipulating ZBTB7A
levels in a cultured human primary astrocyte system, then treating with LPS or saline followed by assessment of
astrocyte reactivity (IHC), chromatin accessibility (via ATAC-seq), epigenetic regulation (ChIP-seq) and gene
expression (RNA-seq). In Aim 2, I will explore the therapeutic potential of targeting Zbtb7a by using novel
astrocyte-specific viral vectors to determine if Zbtb7a is necessary and sufficient in the OFC to affect vulnerability
to inflammation stress-induced behavioral deficits in a preclinical mouse model of social defeat stress. Together
these experiments will offer enormous potential for new mechanistic insights into disease pathology in the
context of a relatively understudied cell-type, astrocytes, in neuroinflammation and stress.
期刊论文(1)
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科研奖励(0)
会议论文
Characterizing effects of OFC astrocyte plasticity in inflammation response and stress vulnerability with single-cell resolution
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批准号:10393087
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项目类别:
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资助金额:$4.54万
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财政年份:2021
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负责人:Sasha Fulton
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依托单位:
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批准号:10795115
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项目类别:
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资助金额:$8.53万
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财政年份:2021
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负责人:Sasha Fulton
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依托单位:
海外基金