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Investigating chromatin-based mechanisms of astrocyte pathology during inflammation response and stress-induced behaviors

Investigating chromatin-based mechanisms of astrocyte pathology during inflammation response and stress-induced behaviors
研究炎症反应和应激诱导行为期间基于染色质的星形胶质细胞病理学机制
批准号:
10246177
负责人:
Sasha Fulton
金额:
$1.0万
依托单位国家:
美国
项目类别:
财政年份:
2020
资助国家:
美国
项目状态:
已结题
起止时间:
2020-08-14 至 2021-08-23
关键词:
ATAC-seqAffectAffectiveAffinity ChromatographyAnhedoniaAnimalsAnxietyAstrocytesAutomobile DrivingAutopsyBacteriaBehaviorBehavioralBindingBinding SitesBiological AssayBrain regionCell NucleusCell physiologyCellsChIP-seqChromatinChromatin Remodeling FactorChronicClinicalComplexControl AnimalCoupledCultured CellsDNA-Binding ProteinsDataData SetDecision MakingDiseaseEpigenetic ProcessFellowshipFemaleFluorescenceFunctional disorderGene ExpressionGene TargetingGenesGeneticGenetic TranscriptionGenomic SegmentGoalsHumanInflammationInflammatoryInflammatory ResponseInvestigationLaboratoriesLaboratory ResearchLentivirus VectorMajor Depressive DisorderMeasuresMediatingMental disordersMentorshipMessenger RNAMethodsMolecularMorphologyMusNF-kappa BNeurogliaNeuronsNuclearPathogenicityPathologicPathologyPathway interactionsPhenotypePopulationPredispositionProcessProteinsRegulationRegulatory ElementResearch PersonnelRewardsRibosomesRodent ModelRoleSalineSignal TransductionSorting - Cell MovementStressSucroseSymptomsSystemTechniquesTestingTherapeuticTherapeutic AgentsTissuesTrainingTranscriptional RegulationTranslatingTransposaseUp-RegulationViral Vectorbasebehavioral phenotypingcareercell cortexcell typecellular transductionchromatin remodelingepigenetic regulationexperimental studygenetic regulatory proteingenome-wideinsightknock-downmalemolecular phenotypemouse modelneuroinflammationneurotransmissionnoveloverexpressionpre-clinicalpreferenceresponsesocialsocial defeatsocial stresstargeted treatmenttranscription factortranscriptome sequencingvector

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中文摘要
翻译
虽然MDD主要是在神经元功能的背景下进行研究,但新出现的证据表明, 神经胶质细胞的失调可能同样重要,特别是在慢性神经炎症反应中, 压力,这是众所周知的,有助于MDD的病理生理学。然而,细胞类型特异性 驱动这些过程的转录动力学仍然不清楚, 可及性分析方法与细胞类型特定方法不兼容。我们的实验室最近 实施了新开发的技术FANS(荧光激活核分选)-耦合ATAC- seq(转座酶可降解染色质测序试验),以分析细胞类型特异性调控蛋白 人类MDD中眶额皮层(OFC)的景观,OFC是一个处理基于奖励的决策的大脑区域, 导致并可能介导抑郁症的享乐缺失症状。有趣的是,我们只检测到MDD特异性开放 染色质区域(OCR)的神经胶质细胞,但不是神经元OFC细胞群。MDD的基因集分析- 特异性OCR显示调节NF-κ B炎症的星形胶质细胞特异性基因显著富集 反应使用基序发现,我鉴定了ZBTB7A,一种染色质重塑蛋白, 在MDD特异性OCR中显著过度表达的序列。最近,ZBTB7A被证明可以 协调染色质对延迟诱导NF-Kb靶基因的不同亚群的可及性,表明 ZBTB7A可能调节慢性NF-κ B应激信号从适应性向病理性的传导。我的飞行员 数据显示,ZBTB7A在人MDD的OFC和人MDD的OFC星形胶质细胞中上调, 临床前慢性社会失败应激(CSDS)小鼠模型以及培养的鼠原代星形胶质细胞中 用LPS(一种诱导NF-κ B和炎症的化合物)处理。根据这些初步数据,我 假设ZBTB7A在OFC星形胶质细胞中的上调作为促凋亡的致病驱动因素, MDD中炎症性NF-Kb活化通过调节关键下游染色质可及性 靶基因,导致MDD相关的行为缺陷。在目标1中,我将描述基本机制 在基线和炎症应激期间,通过操纵ZBTB7A 在培养的人原代星形胶质细胞系统中的水平,然后用LPS或盐水处理,随后评估 星形胶质细胞反应性(IHC)、染色质可及性(通过ATAC-seq)、表观遗传调控(ChIP-seq)和基因 表达(RNA-seq)。在目的2中,我将探索通过使用新的靶向Zbtb7a的治疗潜力。 星形胶质细胞特异性病毒载体,以确定Zbtb7a在OFC中是否是必要的和足够的,以影响脆弱性 在社交失败压力的临床前小鼠模型中,炎症压力诱导的行为缺陷。一起 这些实验将提供巨大的潜力,为新的机制洞察疾病病理学, 在神经炎症和应激中,星形胶质细胞是一种研究相对不足的细胞类型。
英文摘要
Although MDD has been predominantly studied in the context of neuronal function, emerging evidence indicates that dysregulation of glia may be equally important – particularly during chronic neuroinflammation in response to stress, which is known to contribute to the pathophysiology of MDD. However, the cell-type specific transcriptional dynamics driving these processes remain unclear because traditional epigenetic chromatin accessibility profiling methods are not compatible with cell-type specific approaches. Our laboratory has recently implemented the newly developed technique FANS (Fluorescence-Activated Nuclear Sorting)-coupled ATAC- seq (Assay for Transposase-Accessible Chromatin-Sequencing) to profile the cell type-specific regulatory landscape in human MDD in orbitofrontal cortex (OFC), a brain region that processes reward-based decision- making and may mediate anhedonic symptoms in MDD. Interestingly, we only detected MDD-specific open chromatin regions (OCRs) in the glial, but not the neuronal OFC cell population. Gene set analyses of MDD- specific OCRs showed significant enrichment of astrocyte-specific genes regulating NF-KB inflammation response. Using motif discovery, I identified ZBTB7A, a chromatin remodeling protein with recognition sequences significantly overrepresented in MDD-specific OCRs. Recently, ZBTB7A has been shown to orchestrate chromatin accessibility for a distinct subset of delayed induction NF-Kb target genes, suggesting that ZBTB7A may regulate the transduction of chronic NF-Kb stress signals from adaptive to pathological. My pilot data has shown that ZBTB7A is upregulated in the OFC of both human MDD and in OFC astrocytes of a preclinical chronic social defeat stress (CSDS) mouse model, as well as in cultured murine primary astrocytes treated with LPS (a compound which induces NF-KB and inflammation). Given these preliminary data, I hypothesize that upregulation of ZBTB7A in OFC astrocytes acts as a pathogenic driver of pro- inflammatory NF-Kb activation in MDD through modulation of chromatin accessibility at key downstream target genes, leading to MDD-related behavioral deficits. In Aim 1, I will characterize the basic mechanisms of manipulating this chromatin remodeler at baseline and during inflammation stress by manipulating ZBTB7A levels in a cultured human primary astrocyte system, then treating with LPS or saline followed by assessment of astrocyte reactivity (IHC), chromatin accessibility (via ATAC-seq), epigenetic regulation (ChIP-seq) and gene expression (RNA-seq). In Aim 2, I will explore the therapeutic potential of targeting Zbtb7a by using novel astrocyte-specific viral vectors to determine if Zbtb7a is necessary and sufficient in the OFC to affect vulnerability to inflammation stress-induced behavioral deficits in a preclinical mouse model of social defeat stress. Together these experiments will offer enormous potential for new mechanistic insights into disease pathology in the context of a relatively understudied cell-type, astrocytes, in neuroinflammation and stress.
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会议论文
Characterizing effects of OFC astrocyte plasticity in inflammation response and stress vulnerability with single-cell resolution
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