RNA TARGETS FOR ANTIRETROVIRAL THERAPY

这个子项目是许多研究子项目中的一个 由NIH/NCRR资助的中心赠款提供的资源。子项目和 研究者（PI）可能从另一个NIH来源获得了主要资金， 因此可以在其他CRISP条目中表示。所列机构为 研究中心，而研究中心不一定是研究者所在的机构。 尽管高效抗逆转录病毒疗法（HAART）取得了成功，但由于新的HIV-1遗传变异的迅速出现，帮助病毒逃避宿主免疫和多药疗法，人们仍然非常关注。因此，开发新的抗HIV治疗药物和寻找新靶点的需求仍然非常高。为此，我们已经解决了一个高分辨率的NMR结构的RNA茎环结构，SL 1，从5 '非翻译区的HIV-1 RNA基因组。该结构具有高度保守的基序，即富G内环（GRIL），并且它参与HIV-1 RNA基因组的二聚化和RNA包装，这是HIV-1生命周期的两个关键阶段。我们正在使用SL 1 NMR结构来进行结合SL 1的小分子的计算筛选。使用MORDOR软件进行计算对接，并使用Chimera检查结合位姿。使用NMR和荧光技术的实验验证计算命中。

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Despite the success of highly active anti-retroviral therapy (HAART), great concern remains due to rapid emergence of new HIV-1 genetic variants that help the virus escape host immunity and multidrug therapies. Hence, the need to develop new anti-HIV therapeutic drugs and search for new targets remains very high. To this end, we have solved a high-resolution NMR structure for an RNA stem-loop structure, SL1, from the 5'-untranslated region of the HIV-1 RNA genome. This structure has strongly conserved motif, a G-rich internal loop (GRIL), and it is involved in the dimerization of the HIV-1 RNA genome and RNA packaging, two crucial stages of the HIV-1 life cycle. We are using the SL1 NMR structure to carry out a computational screening of small molecules binding SL1. Computational docking is carried out using the MORDOR software, and binding poses are examined using Chimera. Computational hits are verified experimentally using NMR and fluorescent techniques.