Probing Macromolecules at the Molecular Level by Pyrene Excimer Fluorescence

荧光共振能量转移（FRET）无疑是已知的最好的荧光技术来探测内部长度尺度（ILS）和内部动态（IDy）的大分子在溶液中。这些参数很重要，因为它们解释了大分子可以做什么。由于高分子有许多工业应用，他们的研究是非常重要的，不仅从基础科学的角度来看，而且对加拿大经济。FRET的原理是充当光谱标尺。FRET速率常数（kFRET）取决于能量供体和能量受体染料之间的距离。这种关系对于通过测量连接在大分子的特定位置处的两个染料之间的kFRET来测量刚性大分子的尺寸具有相当大的价值。不幸的是，它成为一个诅咒的灵活的大分子有许多标记位点分开的多个距离。然后，由于溶液中柔性大分子的IDy，每个供体-受体对之间的距离不断变化，导致不断变化的kFRET分布。这些条件导致难以处理的数学和FRET只能使定性研究的ILS和IDy的这些复杂的大分子在溶液中。这是一个真正的科学耻辱，因为许多大分子现在可以通过精细控制其复杂的结构来制备，但其在溶液中的定量研究目前是FRET无法实现的。 芘准分子荧光（PEF）是另一种光物理现象，其中准分子通过激发态和基态芘染料之间的相遇而产生。与FRET相反，PEF在接触时发生，这意味着PEF的速率常数（kPEF）不取决于两种染料之间的距离，而是与大分子的IDy和共价连接到大分子的芘标记的局部浓度[Py]loc直接相关。这些特性极大地简化了kPEF测定中涉及的数学运算，该实验室最近证明，即使对于具有最复杂大分子结构的芘标记大分子，也可以测定kPEF。实际上，kPEF产生[Py]loc，其取决于大分子尺寸，并因此取决于大分子的ILS。因此，PEF产生与FRET相同的信息，但通过更简单的数学！ 该建议将扩大这些最近的发现，通过应用PEF研究的ILSs和IDY的多肽，聚合物瓶刷，树枝状聚合物，和多糖在溶液中。这些大分子是当前科学界的一大兴趣。这些研究课题为有兴趣获得高分子科学专业知识的学生提供了极好的培训机会。

Fluorescence resonance energy transfer (FRET) is certainly the best known fluorescence technique to probe internal length scales (ILSs) and internal dynamics (IDy) of macromolecules in solution. These parameters matter as they explain what a macromolecule can do. Since macromolecules have numerous industrial applications, their study is of great importance, not only from a basic science perspective, but also to the Canadian economy. The principle of FRET is to act as a spectroscopic ruler. The FRET rate constant (kFRET) depends on the distance between an energy donor and energy acceptor dye. This relationship is of considerable value to measure the size of rigid macromolecules by measuring kFRET between two dyes attached at specific positions of a macromolecule. Unfortunately, it becomes a curse for flexible macromolecules having numerous labeling sites separated by multiple distances. Then the distance between every donor-acceptor pair is constantly changing due to the IDy of the flexible macromolecule in solution resulting in a constantly varying kFRET distribution. These conditions lead to intractable mathematics and FRET only enables qualitative studies of the ILSs and IDy of these complex macromolecules in solution. This is a true scientific shame since numerous macromolecules can now be prepared with exquisite control over their complex architecture, but whose quantitative study in solution is presently out of reach by FRET. Pyrene excimer fluorescence (PEF) is another photophysical phenomenon whereby an excimer is generated through the encounter between an excited and a ground state pyrene dye. Contrary to FRET, PEF occurs on contact which means that the rate constant of PEF (kPEF) does not depend on the distance between two dyes, but rather is directly related to the IDy of the macromolecule and the local concentration [Py]loc of pyrene labels covalently attached to the macromolecule. These features simplify dramatically the mathematics involved in the determination of kPEF and this laboratory has recently demonstrated that kPEF can be determined even for pyrene-labeled macromolecules having the most complex macromolecular architecture. In effect, kPEF yields [Py]loc which depends on the macromolecular size, and thus the ILSs of a macromolecule. Thus PEF yields the same information as FRET, but through much simpler mathematics! This proposal will expand on these recent discoveries by applying PEF to study the ILSs and IDy of polypeptides, polymeric bottle brushes, dendrimers, and polysaccharides in solution. These macromolecules are of great current scientific interest. These research topics offer excellent training opportunities to students interested in gaining expertise in Macromolecular Science.