WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants.
WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants.
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WaspBase：寄生黄蜂、昆虫宿主和植物之间相互作用的基因组资源
DOI：
10.1093/database/bay081
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发表时间：
2018-01-01
期刊：
影响因子：
--
通讯作者：
Chen X
中科院分区：
文献类型：
--
作者：
Chen L;Lang K;Bi S;Luo J;Liu F;Ye X;Xu J;He K;Li F;Ye G;Chen X
摘要病虫害是困扰农业生产的主要问题之一，造成产量下降和经济损失。寄生蜂是许多农业害虫的天敌，因此被广泛用作生物防治剂。植物、植食昆虫和寄生蜂组成了一个三营养的食物链。了解这一营养系统的相互作用，将有助于开发防治害虫的寄生蜂和破译寄生蜂的寄生机制。然而，这种营养系统的基因组资源并没有很好地组织起来。该数据库包含35种寄生蜂的573个转录组，以及12种寄生蜂、5种寄主昆虫和8种植物的基因组。此外，我们从这些物种的基因组和转录组数据中鉴定出长链非编码RNA、非翻译区域和25个被广泛研究的基因家族。WaspBase提供传统的web服务，如基本本地对齐搜索工具，搜索和下载，以及几个广泛使用的工具，如配置文件隐藏马尔可夫模型，使用快速傅里叶变换的多重对齐，自动对齐修剪和JBrowse。我们还介绍了一群活跃在寄生蜂领域的研究人员，他们应该对构建该领域的科学网络有用。
Abstract Insect pests reduce yield and cause economic losses, which are major problems in agriculture. Parasitic wasps are the natural enemies of many agricultural pests and thus have been widely used as biological control agents. Plants, phytophagous insects and parasitic wasps form a tritrophic food chain. Understanding the interactions in this tritrophic system should be helpful for developing parasitic wasps for pest control and deciphering the mechanisms of parasitism. However, the genomic resources for this tritrophic system are not well organized. Here, we describe the WaspBase, a new database that contains 573 transcriptomes of 35 parasitic wasps and the genomes of 12 parasitic wasps, 5 insect hosts and 8 plants. In addition, we identified long non-coding RNA, untranslated regions and 25 widely studied gene families from the genome and transcriptome data of these species. WaspBase provides conventional web services such as Basic Local Alignment Search Tool, search and download, together with several widely used tools such as profile hidden Markov model, Multiple Alignment using Fast Fourier Transform, automated alignment trimming and JBrowse. We also present a collection of active researchers in the field of parasitic wasps, which should be useful for constructing scientific networks in this field.
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影响因子：
12.3
作者：
Buels R;Yao E;Diesh CM;Hayes RD;Munoz-Torres M;Helt G;Goodstein DM;Elsik CG;Lewis SE;Stein L;Holmes IH
通讯作者：
Holmes IH
影响因子：
14.9
作者：
Mistry J;Finn RD;Eddy SR;Bateman A;Punta M
通讯作者：
Punta M
DOI：
10.1534/g3.117.040741
发表时间：
2017-08-07
期刊：
G3 (Bethesda, Md.)
影响因子：
--
作者：
Geib SM;Liang GH;Murphy TD;Sim SB
通讯作者：
Sim SB
影响因子：
12.3
作者：
Papanicolaou A;Schetelig MF;Arensburger P;Atkinson PW;Benoit JB;Bourtzis K;Castañera P;Cavanaugh JP;Chao H;Childers C;Curril I;Dinh H;Doddapaneni H;Dolan A;Dugan S;Friedrich M;Gasperi G;Geib S;Georgakilas G;Gibbs RA;Giers SD;Gomulski LM;González-Guzmán M;Guillem-Amat A;Han Y;Hatzigeorgiou AG;Hernández-Crespo P;Hughes DS;Jones JW;Karagkouni D;Koskinioti P;Lee SL;Malacrida AR;Manni M;Mathiopoulos K;Meccariello A;Munoz-Torres M;Murali SC;Murphy TD;Muzny DM;Oberhofer G;Ortego F;Paraskevopoulou MD;Poelchau M;Qu J;Reczko M;Robertson HM;Rosendale AJ;Rosselot AE;Saccone G;Salvemini M;Savini G;Schreiner P;Scolari F;Siciliano P;Sim SB;Tsiamis G;Ureña E;Vlachos IS;Werren JH;Wimmer EA;Worley KC;Zacharopoulou A;Richards S;Handler AM
通讯作者：
Handler AM
影响因子：
2.2
作者：
Frederickx, Christine;Dekeirsschieter, Jessica;Haubruge, Eric
通讯作者：
Haubruge, Eric