The jPOST environment: an integrated proteomics data repository and database.
The jPOST environment: an integrated proteomics data repository and database.
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DOI：
10.1093/nar/gky899
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发表时间：
2019-01-08
影响因子：
14.9
通讯作者：
Ishihama Y
中科院分区：
文献类型：
--
作者：
Moriya Y;Kawano S;Okuda S;Watanabe Y;Matsumoto M;Takami T;Kobayashi D;Yamanouchi Y;Araki N;Yoshizawa AC;Tabata T;Iwasaki M;Sugiyama N;Tanaka S;Goto S;Ishihama Y
质谱（MS）的蛋白质组学正在快速进步，从而产生越来越多的较大数据集，具有较高的质量和更高的吞吐量。为了整合从各种项目和机构生成的蛋白质组学数据集，我们在2015年启动了一个名为JPOST（日本蛋白质组标准存储库/数据库，https://jpostdb.org/）的项目。其蛋白质组学数据恢复库，JPostRepo，JPostRepo，于2016年开始操作，并在2016年开始操作。在过去的两年中，接受了10多个基于MS的蛋白质组学数据集。此外，我们开发了一个名为JPOSTDB的新蛋白质组学数据库，其中使用标准化协议重新分析了Jpostrepo中发布的RAW数据集。 JPOSTDB为观众提供了显示被检测到的翻译后修饰的频率，肽上磷酸化位点的共发生以及蛋白基因相间的肽共享的频率。 JPOSTDB还提供了比较蛋白质组学数据集的基本统计分析工具。
Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https://jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets.
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影响因子：
64.8
作者：
Kim, Min-Sik;Pinto, Sneha M.;Getnet, Derese;Nirujogi, Raja Sekhar;Manda, Srikanth S.;Chaerkady, Raghothama;Madugundu, Anil K.;Kelkar, Dhanashree S.;Isserlin, Ruth;Jain, Shobhit;Thomas, Joji K.;Muthusamy, Babylakshmi;Leal-Rojas, Pamela;Kumar, Praveen;Sahasrabuddhe, Nandini A.;Balakrishnan, Lavanya;Advani, Jayshree;George, Bijesh;Renuse, Santosh;Selvan, Lakshmi Dhevi N.;Patil, Arun H.;Nanjappa, Vishalakshi;Radhakrishnan, Aneesha;Prasad, Samarjeet;Subbannayya, Tejaswini;Raju, Rajesh;Kumar, Manish;Sreenivasamurthy, Sreelakshmi K.;Marimuthu, Arivusudar;Sathe, Gajanan J.;Chavan, Sandip;Datta, Keshava K.;Subbannayya, Yashwanth;Sahu, Apeksha;Yelamanchi, Soujanya D.;Jayaram, Savita;Rajagopalan, Pavithra;Sharma, Jyoti;Murthy, Krishna R.;Syed, Nazia;Goel, Renu;Khan, Aafaque A.;Ahmad, Sartaj;Dey, Gourav;Mudgal, Keshav;Chatterjee, Aditi;Huang, Tai-Chung;Zhong, Jun;Wu, Xinyan;Shaw, Patrick G.;Freed, Donald;Zahari, Muhammad S.;Mukherjee, Kanchan K.;Shankar, Subramanian;Mahadevan, Anita;Lam, Henry;Mitchell, Christopher J.;Shankar, Susarla Krishna;Satishchandra, Parthasarathy;Schroeder, John T.;Sirdeshmukh, Ravi;Maitra, Anirban;Leach, Steven D.;Drake, Charles G.;Halushka, Marc K.;Prasad, T. S. Keshava;Hruban, Ralph H.;Kerr, Candace L.;Bader, Gary D.;Iacobuzio-Donahue, Christine A.;Gowda, Harsha;Pandey, Akhilesh
通讯作者：
Pandey, Akhilesh
DOI：
10.1093/database/bat009
发表时间：
2013
期刊：
Database : the journal of biological databases and curation
影响因子：
--
作者：
Mayer G;Montecchi-Palazzi L;Ovelleiro D;Jones AR;Binz PA;Deutsch EW;Chambers M;Kallhardt M;Levander F;Shofstahl J;Orchard S;Vizcaíno JA;Hermjakob H;Stephan C;Meyer HE;Eisenacher M;HUPO-PSI Group
通讯作者：
HUPO-PSI Group
影响因子：
14.9
作者：
Okuda S;Watanabe Y;Moriya Y;Kawano S;Yamamoto T;Matsumoto M;Takami T;Kobayashi D;Araki N;Yoshizawa AC;Tabata T;Sugiyama N;Goto S;Ishihama Y
通讯作者：
Ishihama Y
影响因子：
14.9
作者：
Federhen S
通讯作者：
Federhen S
影响因子：
14.9
作者：
Deutsch EW;Csordas A;Sun Z;Jarnuczak A;Perez-Riverol Y;Ternent T;Campbell DS;Bernal-Llinares M;Okuda S;Kawano S;Moritz RL;Carver JJ;Wang M;Ishihama Y;Bandeira N;Hermjakob H;Vizcaíno JA
通讯作者：
Vizcaíno JA