The Small Subunit rRNA Modification Database.

The Small Subunit rRNA Modification Database.
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DOI:
10.1093/nar/gki015
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发表时间:
2005-01-01
影响因子:
14.9
通讯作者:
Rozenski J
Rozenski J
中科院分区:
生物学2区
文献类型:
--
作者:
McCloskey JA;Rozenski J

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小亚基rRNA修饰数据库提供了一个已报道的来自细菌、古细菌和真核生物的小亚基rRNA中转录后修饰的核苷和序列位点的列表。数据来自完整或部分rRNA序列的报告,包括早期文献中报道的系统发育相关性研究中的RNase T1寡核苷酸目录。数据呈现的选项包括完整的序列图,其中一些已经由数据库管理员在当代基因序列数据的帮助下组装,以及按源生物或修饰的化学身份组织的表格形式。提供了总共32个rRNA序列比对,注释有修饰位点和修饰的化学身份(如果已知),并提供滚动完整序列或用户指定的序列,用于比较观察感兴趣的生物体。该数据库可通过万维网www.example.com进入。
The Small Subunit rRNA Modification Database provides a listing of reported post-transcriptionally modified nucleosides and sequence sites in small subunit rRNAs from bacteria, archaea and eukarya. Data are compiled from reports of full or partial rRNA sequences, including RNase T1 oligonucleotide catalogs reported in earlier literature in studies of phylogenetic relatedness. Options for data presentation include full sequence maps, some of which have been assembled by database curators with the aid of contemporary gene sequence data, and tabular forms organized by source organism or chemical identity of the modification. A total of 32 rRNA sequence alignments are provided, annotated with sites of modification and chemical identities of modifications if known, with provision for scrolling full sequences or user-dictated subsequences for comparative viewing for organisms of interest. The database can be accessed through the World Wide Web at http://medlib.med.utah.edu/SSUmods.
DOI: 10.1126/science.221.4611.656
发表时间: 1983-01-01
期刊: SCIENCE
影响因子: 56.9
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