The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
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DOI：
10.1093/nar/gkm908
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发表时间：
2008-01
影响因子：
14.9
通讯作者：
Ware, Doreen
中科院分区：
文献类型：
--
作者：
Avraham, Shulamit;Tung, Chih-Wei;Ilic, Katica;Jaiswal, Pankaj;Kellogg, Elizabeth A.;McCouch, Susan;Pujar, Anuradha;Reiser, Leonore;Rhee, Seung Y.;Sachs, Martin M.;Schaeffer, Mary;Stein, Lincoln;Stevens, Peter;Vincent, Leszek;Zapata, Felipe;Ware, Doreen
植物本体论联盟（POC，http://www.plantontology.org）是一个合作的努力之间的模型植物基因组数据库和植物研究人员，旨在创建，维护和促进使用的受控词汇（本体论）的植物。本体允许用户将植物结构（解剖学和形态学）和发育阶段的属性归因于数据类型，例如基因和表型，以提供语义框架来进行有意义的跨物种和数据库比较。POC建立在基因本体论联盟（GOC）的突破性工作基础上，采用并扩展了GOC的原则、现有软件和数据库结构。在过去的一年里，POC增加了数百个本体术语，与拟南芥、水稻和玉米的数千个基因和基因产物相关联，这些基因和基因产物可通过最新更新的基于网络的浏览器（http：//www.plantontology.org/amigo/go.cgi）查看、搜索和查询。该联盟还实施了新的功能，以促进PO在基因组研究中的应用，并更新了网站，以保持内容的最新性。在本报告中，我们简要介绍了网站提供的资源、界面的更改、数据更新、社群活动和未来的改进。
The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages to data types, such as genes and phenotypes, to provide a semantic framework to make meaningful cross-species and database comparisons. The POC builds upon groundbreaking work by the Gene Ontology Consortium (GOC) by adopting and extending the GOC's principles, existing software and database structure. Over the past year, POC has added hundreds of ontology terms to associate with thousands of genes and gene products from Arabidopsis, rice and maize, which are available through a newly updated web-based browser (http://www.plantontology.org/amigo/go.cgi) for viewing, searching and querying. The Consortium has also implemented new functionalities to facilitate the application of PO in genomic research and updated the website to keep the contents current. In this report, we present a brief description of resources available from the website, changes to the interfaces, data updates, community activities and future enhancement.
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影响因子：
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作者：
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通讯作者：
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