Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.
Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.
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DOI：
10.1093/pcp/pcq197
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发表时间：
2011-02
影响因子：
4.9
通讯作者：
Hirochika H
中科院分区：
文献类型：
--
作者：
Nagamura Y;Antonio BA;Sato Y;Miyao A;Namiki N;Yonemaru J;Minami H;Kamatsuki K;Shimura K;Shimizu Y;Hirochika H
Rice TOGO浏览器是一个在线公共资源，旨在促进细菌人工染色体（BAC）/P1衍生的人工染色体（PAC）克隆、基因、限制性片段长度多态性（RFLP）/简单序列重复（SSR）标记和以数量性状位点（QTL）表示的表型数据到基因组序列上的映射数据的集成和可视化，并从应用基因组学和功能基因组学的角度提供更有效地利用基因组信息的平台。三个搜索选项，即关键字搜索、区域搜索和性状搜索，在用户友好的界面中生成各种类型的数据，具有三个不同的查看器（染色体查看器、集成图谱查看器和序列查看器），从而提供在染色体水平查看基因和/或 QTL 位置并检索用户定义的基因组区域中的任何序列信息的机会。此外，可以查看和下载由 RFLP/SSR 标记描绘的特定区域中的基因列表、标记列表和基因组序列以及设计为引物的任何序列，以支持正向遗传学方法。该数据库的另一个功能是用于 BLAST 搜索的图形查看器，不仅可以显示具有显着序列相似性的区域的信息，还可以显示与具有相似性但序列之间没有命中的区域相邻的区域的信息。易于使用且直观的用户界面可以帮助广泛的用户检索集成的绘图信息，包括水稻基因组序列上的农艺重要性状。该数据库可以通过http://agri-trait.dna.affrc.go.jp/访问。
The Rice TOGO Browser is an online public resource designed to facilitate integration and visualization of mapping data of bacterial artificial chromosome (BAC)/P1-derived artificial chromosome (PAC) clones, genes, restriction fragment length polymorphism (RFLP)/simple sequence repeat (SSR) markers and phenotype data represented as quantitative trait loci (QTLs) onto the genome sequence, and to provide a platform for more efficient utilization of genome information from the point of view of applied genomics as well as functional genomics. Three search options, namely keyword search, region search and trait search, generate various types of data in a user-friendly interface with three distinct viewers, a chromosome viewer, an integrated map viewer and a sequence viewer, thereby providing the opportunity to view the position of genes and/or QTLs at the chromosomal level and to retrieve any sequence information in a user-defined genome region. Furthermore, the gene list, marker list and genome sequence in a specified region delineated by RFLP/SSR markers and any sequences designed as primers can be viewed and downloaded to support forward genetics approaches. An additional feature of this database is the graphical viewer for BLAST search to reveal information not only for regions with significant sequence similarity but also for regions adjacent to those with similarity but with no hits between sequences. An easy to use and intuitive user interface can help a wide range of users in retrieving integrated mapping information including agronomically important traits on the rice genome sequence. The database can be accessed at http://agri-trait.dna.affrc.go.jp/.
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影响因子：
64.8
作者：
Matsumoto, T;Wu, JZ;Sugiura, M
通讯作者：
Sugiura, M
影响因子：
14.9
作者：
Ouyang S;Zhu W;Hamilton J;Lin H;Campbell M;Childs K;Thibaud-Nissen F;Malek RL;Lee Y;Zheng L;Orvis J;Haas B;Wortman J;Buell CR
通讯作者：
Buell CR
Gramene QTL数据库：开发，内容和应用程序。
DOI：
10.1093/database/bap005
发表时间：
2009
期刊：
Database : the journal of biological databases and curation
影响因子：
--
作者：
Ni J;Pujar A;Youens-Clark K;Yap I;Jaiswal P;Tecle I;Tung CW;Ren L;Spooner W;Wei X;Avraham S;Ware D;Stein L;McCouch S
通讯作者：
McCouch S
影响因子：
14.9
作者：
Rice Annotation Project;Tanaka T;Antonio BA;Kikuchi S;Matsumoto T;Nagamura Y;Numa H;Sakai H;Wu J;Itoh T;Sasaki T;Aono R;Fujii Y;Habara T;Harada E;Kanno M;Kawahara Y;Kawashima H;Kubooka H;Matsuya A;Nakaoka H;Saichi N;Sanbonmatsu R;Sato Y;Shinso Y;Suzuki M;Takeda J;Tanino M;Todokoro F;Yamaguchi K;Yamamoto N;Yamasaki C;Imanishi T;Okido T;Tada M;Ikeo K;Tateno Y;Gojobori T;Lin YC;Wei FJ;Hsing YI;Zhao Q;Han B;Kramer MR;McCombie RW;Lonsdale D;O'Donovan CC;Whitfield EJ;Apweiler R;Koyanagi KO;Khurana JP;Raghuvanshi S;Singh NK;Tyagi AK;Haberer G;Fujisawa M;Hosokawa S;Ito Y;Ikawa H;Shibata M;Yamamoto M;Bruskiewich RM;Hoen DR;Bureau TE;Namiki N;Ohyanagi H;Sakai Y;Nobushima S;Sakata K;Barrero RA;Sato Y;Souvorov A;Smith-White B;Tatusova T;An S;An G;OOta S;Fuks G;Fuks G;Messing J;Christie KR;Lieberherr D;Kim H;Zuccolo A;Wing RA;Nobuta K;Green PJ;Lu C;Meyers BC;Chaparro C;Piegu B;Panaud O;Echeverria M
通讯作者：
Echeverria M
影响因子：
7
作者：
Gojobori, Takashi
通讯作者：
Gojobori, Takashi